Bicocca Open Archive

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GRAUDENZI, ALEX
 Distribuzione geografica
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Continente #
NA - Nord America 10541
EU - Europa 4866
AS - Asia 766
SA - Sud America 12
Continente sconosciuto - Info sul continente non disponibili 7
AF - Africa 4
OC - Oceania 3
Totale 16199
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Nazione #
US - Stati Uniti d'America 10404
DE - Germania 2368
IT - Italia 1148
SE - Svezia 500
CN - Cina 471
UA - Ucraina 211
VN - Vietnam 181
CA - Canada 134
DK - Danimarca 125
GB - Regno Unito 123
IE - Irlanda 88
RU - Federazione Russa 67
FR - Francia 54
BE - Belgio 45
IN - India 43
FI - Finlandia 41
TR - Turchia 33
NL - Olanda 29
CH - Svizzera 28
IR - Iran 16
AT - Austria 8
PL - Polonia 7
BR - Brasile 5
CL - Cile 5
ES - Italia 5
EU - Europa 5
GR - Grecia 4
HK - Hong Kong 4
HU - Ungheria 4
JP - Giappone 4
KR - Corea 4
LU - Lussemburgo 3
MX - Messico 3
PH - Filippine 3
EC - Ecuador 2
NZ - Nuova Zelanda 2
RO - Romania 2
SC - Seychelles 2
SG - Singapore 2
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A2 - ???statistics.table.value.countryCode.A2??? 1
AU - Australia 1
BA - Bosnia-Erzegovina 1
BD - Bangladesh 1
BG - Bulgaria 1
EE - Estonia 1
EG - Egitto 1
GN - Guinea 1
ID - Indonesia 1
IL - Israele 1
IS - Islanda 1
KW - Kuwait 1
MD - Moldavia 1
SA - Arabia Saudita 1
SI - Slovenia 1
Totale 16199
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Città #
Ann Arbor 5712
Frankfurt am Main 2298
Fairfield 672
Chandler 576
Woodbridge 549
Wilmington 536
Milan 397
Houston 336
Ashburn 328
Seattle 260
Cambridge 212
Dearborn 203
Jacksonville 200
Princeton 161
Dong Ket 128
Nanjing 118
Dublin 87
Toronto 71
Lawrence 64
San Diego 56
Guangzhou 44
Brussels 42
Altamura 41
Sacramento 40
Beijing 36
Lachine 35
Nanchang 35
Andover 34
Jinan 27
Tianjin 23
Shenyang 22
Boardman 21
Fremont 21
Ottawa 21
Zhengzhou 21
Hebei 20
Rome 15
Falls Church 14
Hangzhou 14
Leiden 14
Ningbo 14
Changsha 13
Ardea 12
Lugano 12
Cernobbio 11
Los Angeles 11
Taizhou 11
Jiaxing 10
Kunming 10
Melzo 9
Mugnano Di Napoli 9
Norwalk 9
Shanghai 9
Corbetta 8
Mountain View 8
Napoli 8
Parma 8
Segrate 8
Triuggio 8
Turin 8
Duncan 7
Genoa 7
Lissone 7
Balerna 6
Como 6
Dallas 6
Desio 6
Kiev 6
Kocaeli 6
Leawood 6
Monza 6
New York 6
Phoenix 6
Redmond 6
Torino 6
Trieste 6
Valenza 6
Vienna 6
Changchun 5
Cologno Monzese 5
Edmonton 5
Florence 5
Grafing 5
Haikou 5
London 5
Padova 5
Usmate Velate 5
Zanjan 5
Bologna 4
Brescia 4
Carrara 4
Caserta 4
Chicago 4
Hefei 4
Huizen 4
Nardò 4
Novara 4
San Giovanni Bianco 4
Taiyuan 4
Varese 4
Totale 13909
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Nome #
Synchronization effects in a metabolism-driven model of multi-cellular system 455
MaREA4Galaxy: metabolic reaction enrichment analysis and visualization of RNA-seq data using Galaxy 442
Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power 431
MaREA: Metabolic feature extraction, enrichment and visualization of RNAseq data 425
Integration of single-cell RNA-seq data into population models to characterize cancer metabolism 423
Longitudinal cancer evolution from single cells 408
Personalized therapy design for liquid tumors via optimal control theory 395
The Influence of Nutrients Diffusion on a Metabolism-driven Model of a Multi-cellular System 390
Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data 387
FBCA, A multiscale modeling framework combining cellular automata and flux balance analysis 383
Characterization of intra-host SARS-CoV-2 variants improves phylogenomic reconstruction and may reveal functionally convergent mutations 358
A review of computational strategies for denoising and imputation of single-cell transcriptomic data 341
Modeling cumulative biological phenomena with Suppes-Bayes causal networks 338
TRONCO: An R package for the inference of cancer progression models from heterogeneous genomic data 337
CAPRI: Efficient Inference of Cancer Progression Models from Cross-sectional Data 332
Integration of single-cell RNA-sequencing data into flux balance cellular automata 330
Design of the TRONCO bioconductor package for TRanslational ONCOlogy 324
Efficient computational strategies to learn the structure of probabilistic graphical models of cumulative phenomena 323
Structural Learning of Probabilistic Graphical Models of Cumulative Phenomena 315
Investigating the Compositional Structure Of Deep Neural Networks 314
Algorithmic methods to infer the evolutionary trajectories in cancer progression 306
cyTRON and cyTRON/JS: two Cytoscape-based applications for the inference of cancer evolution models 304
VERSO: a comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples 304
SpidermiR: An R/bioconductor package for integrative analysis with miRNA data 298
A closed-loop optimization framework for personalized cancer therapy design 281
CABeRNET: A Cytoscape app for augmented Boolean models of gene regulatory NETworks 280
Pathway-based classification of breast cancer subtypes 279
An Optimal Control Framework for the Automated Design of Personalized Cancer Treatments 276
Ordering cancer mutational profiles of cross-sectional copy number alterations 267
VERSO:A COMPREHENSIVE FRAMEWORK FOR THE INFERENCE OF ROBUST PHYLOGENIES AND THE QUANTIFICATION OF INTRA-HOST GENOMIC DIVERSITY OF VIRAL SAMPLES 266
Cognac: A chaste plugin for the multiscale simulation of gene regulatory networks driving the spatial dynamics of tissues and cancer 261
A Computational Framework To Infer The Order Of Accumulating Mutations In Individual Tumors 244
On the use of topological features of metabolic networks for the classification of cancer samples 233
Understanding deep learning with activation pattern diagrams 226
A computational framework to infer the order of accumulating mutations in individual tumors 218
Modeling Spatio-Temporal Dynamics of Metabolic Networks with Cellular Automata and Constraint-Based Methods 203
LACE: Inference of cancer evolution models from longitudinal single-cell sequencing data 187
VirMutSig: Discovery and assignment of viral mutational signatures from sequencing data 186
Combining multi-target regression deep neural networks and kinetic modeling to predict relative fluxes in reaction systems 168
PMCE: efficient inference of expressive models of cancer evolution with high prognostic power 166
Inferring Tree Causal Models of Cancer Progression with Probability Raising 161
A model of protocell based on the introduction of a semi-permeable membrane in a stochastic model of catalytic reaction networks 159
Recent developments in research on catalytic reaction networks 156
GeStoDifferent: A Cytoscape plugin for the generation and the identification of gene regulatory networks describing a stochastic cell differentiation process 153
Investigating the Role of Network Topology and Dynamical Regimes on the Dynamics of a Cell Differentiation Model 153
Variant calling from scRNA-seq data allows the assessment of cellular identity in patient-derived cell lines 151
Distributed delays in a hybrid model of tumor-Immune system interplay 145
Analysis of the spatial and dynamical properties of a multiscale model of intestinal crypts 144
OG-SPACE: Optimized Stochastic Simulation of Spatial Models of Cancer Evolution 144
Large-Scale Analysis of SARS-CoV-2 Synonymous Mutations Reveals the Adaptation to the Human Codon Usage During the Virus Evolution 143
On RAF Sets and Autocatalytic Cycles in Random Reaction Networks 135
Investigating the relation between stochastic differentiation and homeostasis in intestinal crypts via multiscale modeling 120
Preface - Proc. Wivace 2013 - Italian Workshop on Artificial Life and Evolutionary Computation 117
Effects of delayed immune-response in tumor immune-system interplay 117
Parameter sensitivity analysis of stochastic models: Application to catalytic reaction networks 110
A stochastic model of the emergence of autocatalytic cycles 108
The role of backward reactions in a stochastic model of catalytic reaction networks 108
How critical random boolean networks may be affected by the interaction with others 108
A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development 107
Growth and division in a dynamic protocell model 106
A stochastic model of autocatalytic reaction networks 105
Ordering copy number alteration data to analyze colorectal cancer progression 102
Mutational signatures and heterogeneous host response revealed via large-scale characterization of SARS-CoV-2 genomic diversity 100
Chemotherapy after PD-1 inhibitors in relapsed/refractory Hodgkin lymphoma: Outcomes and clonal evolution dynamics 100
Dynamical properties of a Boolean model of gene regulatory network with memory 97
Inferring causal models of cancer progression with a shrinkage estimator and probability raising 96
A multiscale model of intestinal crypts dynamics 94
Natural Computing: Preface 92
A stochastic model of catalytic reaction networks in protocells 92
The detection of dynamical organization in cancer evolution models 92
The diffusion of perturbations in a model of coupled random boolean networks 90
The simulation of gene knock-out in scale-free random boolean models of genetic networks 85
Investigating Cell Criticality 85
Why a simple model of genetic regulatory networks describes the distribution of avalanches in gene expression data 82
The influence of different kinetic rates on the dynamics of a simple model of catalytic reaction network 79
The influence of the residence time on the dynamics of catalytic reaction networks of molecules 70
Robustness analysis of a boolean model of gene regulatory network with memory 70
The role of energy in a stochastic model of the emergence of autocatalytic sets 68
SparseSignatures: An R package using LASSO-regularized non-negative matrix factorization to identify mutational signatures from human tumor samples 64
Early detection and improved genomic surveillance of SARS-CoV-2 variants from deep sequencing data 60
J-SPACE: a Julia package for the simulation of spatial models of cancer evolution and of sequencing experiments 55
Comunicazione cellulare, livelli e strutture ordinate 46
Methods, computer-accessible medium and systems to model disease progression using biomedical data from multiple patients 43
Characterization of SARS-CoV-2 Mutational Signatures from 1.5+ Million Raw Sequencing Samples 33
LACE 2.0: an interactive R tool for the inference and visualization of longitudinal cancer evolution 4
Totale 16953
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Categoria #
all - tutte 24166
article - articoli 0
book - libri 0
conference - conferenze 0
curatela - curatele 0
other - altro 0
patent - brevetti 0
selected - selezionate 0
volume - volumi 0
Totale 24166
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Totale Lug Ago Sett Ott Nov Dic Gen Feb Mar Apr Mag Giu
2017/2018114 0000 00 00 34342224
2018/20191074 21262334 5197 6741 58123221312
2019/20202428 245102131206 193272 356247 23919315886
2020/20213338 72135216256 218239 240282 402406373499
2021/20224678 404360394348 296406 502429 328322444445
2022/20234296 685984559559 320314 117386 372000
Totale 16953