GRAUDENZI, ALEX
GRAUDENZI, ALEX
DIPARTIMENTO DI INFORMATICA, SISTEMISTICA E COMUNICAZIONE
Early tolerance and late persistence as alternative drug responses in cancer
2025 Punzi, S; Cittaro, D; Gatti, G; Crupi, G; Botrugno, O; Cartalemi, A; Gutfreund, A; Oneto, C; Giansanti, V; Battistini, C; Santacatterina, G; Patruno, L; Villanti, I; Palumbo, M; Laverty, D; Giannese, F; Graudenzi, A; Caravagna, G; Antoniotti, M; Nagel, Z; Cavallaro, U; Lanfrancone, L; Yap, T; Draetta, G; Balaban, N; Tonon, G
The immune cell dynamics in the peripheral blood of cHL patients receiving anti-PD1 treatment
2025 Cristaldi, V; Terzi di Bergamo, L; Patruno, L; Kallikourdis, M; Cassanmagnago, G; Corrado, F; Calabretta, E; Condoluci, A; di Trani, M; Rahal, D; Basso, G; Peano, C; Graudenzi, A; Antoniotti, M; Rossi, D; Carlo-Stella, C
A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing
2023 Patruno, L; Milite, S; Bergamin, R; Calonaci, N; D'Onofrio, A; Anselmi, F; Antoniotti, M; Graudenzi, A; Caravagna, G
Characterization of cancer subtypes associated with clinical outcomes by multi-omics integrative clustering
2023 Crippa, V; Malighetti, F; Villa, M; Graudenzi, A; Piazza, R; Mologni, L; Ramazzotti, D
Characterization of SARS-CoV-2 Mutational Signatures from 1.5+ Million Raw Sequencing Samples
2023 Aroldi, A; Angaroni, F; D’Aliberti, D; Spinelli, S; Crespiatico, I; Crippa, V; Piazza, R; Graudenzi, A; Ramazzotti, D
Evolutionary signatures of human cancers revealed via genomic analysis of over 35,000 patients
2023 Fontana, D; Crespiatico, I; Crippa, V; Malighetti, F; Villa, M; Angaroni, F; De Sano, L; Aroldi, A; Antoniotti, M; Caravagna, G; Piazza, R; Graudenzi, A; Mologni, L; Ramazzotti, D
Exploring the Solution Space of Cancer Evolution Inference Frameworks for Single-Cell Sequencing Data
2023 Maspero, D; Angaroni, F; Patruno, L; Ramazzotti, D; Posada, D; Graudenzi, A
LACE 2.0: an interactive R tool for the inference and visualization of longitudinal cancer evolution
2023 Ascolani, G; Angaroni, F; Maspero, D; Craighero, F; Bhavesh, N; Piazza, R; Damiani, C; Ramazzotti, D; Antoniotti, M; Graudenzi, A
Unity is strength: Improving the detection of adversarial examples with ensemble approaches
2023 Craighero, F; Angaroni, F; Stella, F; Damiani, C; Antoniotti, M; Graudenzi, A
Chemotherapy after PD-1 inhibitors in relapsed/refractory Hodgkin lymphoma: Outcomes and clonal evolution dynamics
2022 Calabretta, E; Guidetti, A; Ricci, F; Di Trani, M; Monfrini, C; Magagnoli, M; Bramanti, S; Maspero, D; Morello, L; Merli, M; Di Rocco, A; Graudenzi, A; Derenzini, E; Antoniotti, M; Rossi, D; Corradini, P; Santoro, A; Carlo‐stella, C
Early detection and improved genomic surveillance of SARS-CoV-2 variants from deep sequencing data
2022 Ramazzotti, D; Maspero, D; Angaroni, F; Spinelli, S; Antoniotti, M; Piazza, R; Graudenzi, A
J-SPACE: a Julia package for the simulation of spatial models of cancer evolution and of sequencing experiments
2022 Angaroni, F; Guidi, A; Ascolani, G; D'Onofrio, A; Antoniotti, M; Graudenzi, A
LACE: Inference of cancer evolution models from longitudinal single-cell sequencing data
2022 Ramazzotti, D; Angaroni, F; Maspero, D; Ascolani, G; Castiglioni, I; Piazza, R; Antoniotti, M; Graudenzi, A
Large-Scale Analysis of SARS-CoV-2 Synonymous Mutations Reveals the Adaptation to the Human Codon Usage During the Virus Evolution
2022 Ramazzotti, D; Angaroni, F; Maspero, D; Mauri, M; D’Aliberti, D; Fontana, D; Antoniotti, M; Elli, E; Graudenzi, A; Piazza, R
PMCE: efficient inference of expressive models of cancer evolution with high prognostic power
2022 Angaroni, F; Chen, K; Damiani, C; Caravagna, G; Graudenzi, A; Ramazzotti, D
SparseSignatures: An R package using LASSO-regularized non-negative matrix factorization to identify mutational signatures from human tumor samples
2022 Mella, L; Lal, A; Angaroni, F; Maspero, D; Piazza, R; Sidow, A; Antoniotti, M; Graudenzi, A; Ramazzotti, D
Two-Level Detection of Dynamic Organization in Cancer Evolution Models
2022 D'Addese, G; Graudenzi, A; La Rocca, L; Villani, M
Variant calling from scRNA-seq data allows the assessment of cellular identity in patient-derived cell lines
2022 Ramazzotti, D; Angaroni, F; Maspero, D; Ascolani, G; Castiglioni, I; Piazza, R; Antoniotti, M; Graudenzi, A
A review of computational strategies for denoising and imputation of single-cell transcriptomic data
2021 Patruno, L; Maspero, D; Craighero, F; Angaroni, F; Antoniotti, M; Graudenzi, A
Combining multi-target regression deep neural networks and kinetic modeling to predict relative fluxes in reaction systems
2021 Patruno, L; Craighero, F; Maspero, D; Graudenzi, A; Damiani, C