CARAVAGNA, GIULIO
CARAVAGNA, GIULIO
DIPARTIMENTO DI INFORMATICA, SISTEMISTICA E COMUNICAZIONE
Comprehensive analysis of mutational processes across 20 000 adult and pediatric tumors
2025 Villa, M; Malighetti, F; De, S; Villa, A; Cordani, N; Aroldi, A; Antoniotti, M; Caravagna, G; Graudenzi, A; Piazza, R; Mologni, L; Ramazzotti, D
Early tolerance and late persistence as alternative drug responses in cancer
2025 Punzi, S; Cittaro, D; Gatti, G; Crupi, G; Botrugno, O; Cartalemi, A; Gutfreund, A; Oneto, C; Giansanti, V; Battistini, C; Santacatterina, G; Patruno, L; Villanti, I; Palumbo, M; Laverty, D; Giannese, F; Graudenzi, A; Caravagna, G; Antoniotti, M; Nagel, Z; Cavallaro, U; Lanfrancone, L; Yap, T; Draetta, G; Balaban, N; Tonon, G
Evolutionary signatures of human cancers revealed via genomic analysis of over 35,000 patients
2023 Fontana, D; Crespiatico, I; Crippa, V; Malighetti, F; Villa, M; Angaroni, F; De Sano, L; Aroldi, A; Antoniotti, M; Caravagna, G; Piazza, R; Graudenzi, A; Mologni, L; Ramazzotti, D
PMCE: efficient inference of expressive models of cancer evolution with high prognostic power
2022 Angaroni, F; Chen, K; Damiani, C; Caravagna, G; Graudenzi, A; Ramazzotti, D
Learning the structure of Bayesian Networks via the bootstrap
2021 Caravagna, G; Ramazzotti, D
Detecting repeated cancer evolution from multi-region tumor sequencing data
2018 Caravagna, G; Giarratano, Y; Ramazzotti, D; Tomlinson, I; Graham, T; Sanguinetti, G; Sottoriva, A
Modeling cumulative biological phenomena with Suppes-Bayes causal networks
2018 Ramazzotti, D; Graudenzi, A; Caravagna, G; Antoniotti, M
CABeRNET: A Cytoscape app for augmented Boolean models of gene regulatory NETworks
2016 Paroni, A; Graudenzi, A; Caravagna, G; Damiani, C; Mauri, G; Antoniotti, M
TRONCO: An R package for the inference of cancer progression models from heterogeneous genomic data
2016 De Sano, L; Caravagna, G; Ramazzotti, D; Graudenzi, A; Mauri, G; Mishra, B; Antoniotti, M
Automatising the analysis of stochastic biochemical time-series
2015 Caravagna, G; De Sano, L; Antoniotti, M
CAPRI: Efficient Inference of Cancer Progression Models from Cross-sectional Data
2015 Ramazzotti, D; Caravagna, G; Olde Loohuis, L; Graudenzi, A; Korsunsky, I; Mauri, G; Antoniotti, M; Mishra, B
Cognac: A chaste plugin for the multiscale simulation of gene regulatory networks driving the spatial dynamics of tissues and cancer
2015 Rubinacci, S; Graudenzi, A; Caravagna, G; Mauri, G; Osborne, J; Pitt Francis, J; Antoniotti, M
Bounded noises as a natural tool to model extrinsic fluctuations in biomolecular networks
2014 De Franciscis, S; Caravagna, G; D'Onofrio, A
Inferring Tree Causal Models of Cancer Progression with Probability Raising
2014 Olde Loohuis, L; Caravagna, G; Graudenzi, A; Ramazzotti, D; Mauri, G; Antoniotti, M; Mishra, B
Investigating the relation between stochastic differentiation and homeostasis in intestinal crypts via multiscale modeling
2014 Graudenzi, A; Caravagna, G; De Matteis, G; Antoniotti, M
Natural Computing: Preface
2014 Graudenzi, A; Caravagna, G; Mauri, G
Stochastic Hybrid Automata with delayed transitions to model biochemical systems with delays
2014 Caravagna, G; D'Onofrio, A; Antoniotti, M; Mauri, G
Analysis of the spatial and dynamical properties of a multiscale model of intestinal crypts
2013 Caravagna, G; Graudenzi, A; Antoniotti, M; De Matteis, G
Bounded Extrinsic Noises Affecting Biochemical Networks with Low Molecule Numbers
2013 Caravagna, G; Mauri, G; D’Onofrio, A
Distributed delays in a hybrid model of tumor-Immune system interplay
2013 Caravagna, G; Graudenzi, A; D'Onofrio, A