ANGARONI, FABRIZIO
ANGARONI, FABRIZIO
DIPARTIMENTO DI INFORMATICA, SISTEMISTICA E COMUNICAZIONE
Characterization of SARS-CoV-2 Mutational Signatures from 1.5+ Million Raw Sequencing Samples
2023 Aroldi, A; Angaroni, F; D’Aliberti, D; Spinelli, S; Crespiatico, I; Crippa, V; Piazza, R; Graudenzi, A; Ramazzotti, D
Evolutionary signatures of human cancers revealed via genomic analysis of over 35,000 patients
2023 Fontana, D; Crespiatico, I; Crippa, V; Malighetti, F; Villa, M; Angaroni, F; De Sano, L; Aroldi, A; Antoniotti, M; Caravagna, G; Piazza, R; Graudenzi, A; Mologni, L; Ramazzotti, D
Exploring the Solution Space of Cancer Evolution Inference Frameworks for Single-Cell Sequencing Data
2023 Maspero, D; Angaroni, F; Patruno, L; Ramazzotti, D; Posada, D; Graudenzi, A
LACE 2.0: an interactive R tool for the inference and visualization of longitudinal cancer evolution
2023 Ascolani, G; Angaroni, F; Maspero, D; Craighero, F; Bhavesh, N; Piazza, R; Damiani, C; Ramazzotti, D; Antoniotti, M; Graudenzi, A
Early detection and improved genomic surveillance of SARS-CoV-2 variants from deep sequencing data
2022 Ramazzotti, D; Maspero, D; Angaroni, F; Spinelli, S; Antoniotti, M; Piazza, R; Graudenzi, A
J-SPACE: a Julia package for the simulation of spatial models of cancer evolution and of sequencing experiments
2022 Angaroni, F; Guidi, A; Ascolani, G; D'Onofrio, A; Antoniotti, M; Graudenzi, A
LACE: Inference of cancer evolution models from longitudinal single-cell sequencing data
2022 Ramazzotti, D; Angaroni, F; Maspero, D; Ascolani, G; Castiglioni, I; Piazza, R; Antoniotti, M; Graudenzi, A
Large-Scale Analysis of SARS-CoV-2 Synonymous Mutations Reveals the Adaptation to the Human Codon Usage During the Virus Evolution
2022 Ramazzotti, D; Angaroni, F; Maspero, D; Mauri, M; D’Aliberti, D; Fontana, D; Antoniotti, M; Elli, E; Graudenzi, A; Piazza, R
PMCE: efficient inference of expressive models of cancer evolution with high prognostic power
2022 Angaroni, F; Chen, K; Damiani, C; Caravagna, G; Graudenzi, A; Ramazzotti, D
SparseSignatures: An R package using LASSO-regularized non-negative matrix factorization to identify mutational signatures from human tumor samples
2022 Mella, L; Lal, A; Angaroni, F; Maspero, D; Piazza, R; Sidow, A; Antoniotti, M; Graudenzi, A; Ramazzotti, D
Variant calling from scRNA-seq data allows the assessment of cellular identity in patient-derived cell lines
2022 Ramazzotti, D; Angaroni, F; Maspero, D; Ascolani, G; Castiglioni, I; Piazza, R; Antoniotti, M; Graudenzi, A
A review of computational strategies for denoising and imputation of single-cell transcriptomic data
2021 Patruno, L; Maspero, D; Craighero, F; Angaroni, F; Antoniotti, M; Graudenzi, A
Mutational signatures and heterogeneous host response revealed via large-scale characterization of SARS-CoV-2 genomic diversity
2021 Graudenzi, A; Maspero, D; Angaroni, F; Piazza, R; Ramazzotti, D
OG-SPACE: Optimized Stochastic Simulation of Spatial Models of Cancer Evolution
2021 Angaroni, F; Antoniotti, M; Graudenzi, A
On the use of topological features of metabolic networks for the classification of cancer samples
2021 Machicao, J; Craighero, F; Maspero, D; Angaroni, F; Damiani, C; Graudenzi, A; Antoniotti, M; Bruno, O
Optimal Control of a Discrete Time Stochastic Model of an Epidemic Spreading in Arbitrary Networks
2021 Angaroni, F; Damiani, C; Ramunni, G; Antoniotti, M
VERSO: a comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples
2021 Ramazzotti., D; Angaroni, F; Maspero, D; Gambacorti-Passerini, C; Antoniotti, M; Graudenzi, A; Piazza, R
VirMutSig: Discovery and assignment of viral mutational signatures from sequencing data
2021 Maspero, D; Angaroni, F; Porro, D; Piazza, R; Graudenzi, A; Ramazzotti, D
A closed-loop optimization framework for personalized cancer therapy design
2020 Angaroni, F; Pennati, M; Patruno, L; Maspero, D; Antoniotti, M; Graudenzi, A
An Optimal Control Framework for the Automated Design of Personalized Cancer Treatments
2020 Angaroni, F; Graudenzi, A; Rossignolo, M; Maspero, D; Calarco, T; Piazza, R; Montangero, S; Antoniotti, M