ANTONIOTTI, MARCO
ANTONIOTTI, MARCO
DIPARTIMENTO DI INFORMATICA, SISTEMISTICA E COMUNICAZIONE
Scalable integration of Multiomic single cell data using Generative Adversarial Networks
In corso di stampa Giansanti, V; Antoniotti, M; Cittaro, D
LACE 2.0: an interactive R tool for the inference and visualization of longitudinal cancer evolution
2023 Ascolani, G; Angaroni, F; Maspero, D; Craighero, F; Bhavesh, N; Piazza, R; Damiani, C; Ramazzotti, D; Antoniotti, M; Graudenzi, A
Large-Scale Analysis of SARS-CoV-2 Synonymous Mutations Reveals the Adaptation to the Human Codon Usage During the Virus Evolution
2022 Ramazzotti, D; Angaroni, F; Maspero, D; Mauri, M; D’Aliberti, D; Fontana, D; Antoniotti, M; Elli, E; Graudenzi, A; Piazza, R
SparseSignatures: An R package using LASSO-regularized non-negative matrix factorization to identify mutational signatures from human tumor samples
2022 Mella, L; Lal, A; Angaroni, F; Maspero, D; Piazza, R; Sidow, A; Antoniotti, M; Graudenzi, A; Ramazzotti, D
Early detection and improved genomic surveillance of SARS-CoV-2 variants from deep sequencing data
2022 Ramazzotti, D; Maspero, D; Angaroni, F; Spinelli, S; Antoniotti, M; Piazza, R; Graudenzi, A
Variant calling from scRNA-seq data allows the assessment of cellular identity in patient-derived cell lines
2022 Ramazzotti, D; Angaroni, F; Maspero, D; Ascolani, G; Castiglioni, I; Piazza, R; Antoniotti, M; Graudenzi, A
Chemotherapy after PD-1 inhibitors in relapsed/refractory Hodgkin lymphoma: Outcomes and clonal evolution dynamics
2022 Calabretta, E; Guidetti, A; Ricci, F; Di Trani, M; Monfrini, C; Magagnoli, M; Bramanti, S; Maspero, D; Morello, L; Merli, M; Di Rocco, A; Graudenzi, A; Derenzini, E; Antoniotti, M; Rossi, D; Corradini, P; Santoro, A; Carlo‐stella, C
LACE: Inference of cancer evolution models from longitudinal single-cell sequencing data
2022 Ramazzotti, D; Angaroni, F; Maspero, D; Ascolani, G; Castiglioni, I; Piazza, R; Antoniotti, M; Graudenzi, A
J-SPACE: a Julia package for the simulation of spatial models of cancer evolution and of sequencing experiments
2022 Angaroni, F; Guidi, A; Ascolani, G; D'Onofrio, A; Antoniotti, M; Graudenzi, A
Variant calling from scRNA-seq data allows the assessment of cellular identity in patient-derived cell lines
2021 Ramazzotti, D; Angaroni, F; Maspero, D; Ascolani, G; Castiglioni, I; Piazza, R; Antoniotti, M; Graudenzi, A
OG-SPACE: Optimized Stochastic Simulation of Spatial Models of Cancer Evolution
2021 Angaroni, F; Antoniotti, M; Graudenzi, A
Optimal Control of a Discrete Time Stochastic Model of an Epidemic Spreading in Arbitrary Networks
2021 Angaroni, F; Damiani, C; Ramunni, G; Antoniotti, M
On the use of topological features of metabolic networks for the classification of cancer samples
2021 Machicao, J; Craighero, F; Maspero, D; Angaroni, F; Damiani, C; Graudenzi, A; Antoniotti, M; Bruno, O
A review of computational strategies for denoising and imputation of single-cell transcriptomic data
2021 Patruno, L; Maspero, D; Craighero, F; Angaroni, F; Antoniotti, M; Graudenzi, A
VERSO: a comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples
2021 Ramazzotti., D; Angaroni, F; Maspero, D; Gambacorti-Passerini, C; Antoniotti, M; Graudenzi, A; Piazza, R
Characterization of intra-host SARS-CoV-2 variants improves phylogenomic reconstruction and may reveal functionally convergent mutations
2020 Ramazzotti, D; Angaroni, F; Maspero, D; Gambacorti-Passerini, C; Antoniotti, M; Graudenzi, A; Piazza, R
Longitudinal cancer evolution from single cells
2020 Ramazzotti, D; Angaroni, F; Maspero, D; Ascolani, G; Castiglioni, I; Piazza, R; Antoniotti, M; Graudenzi, A
Why You Cannot (Yet) Write an "Interval Arithmetic" Library in Common Lisp -- or: Hammering Some Sense into :ieee-floating-point
2020 Antoniotti, M
Network Bioscience
2020 Pellegrini, M; Antoniotti, M; Mishra, M
MaREA4Galaxy: metabolic reaction enrichment analysis and visualization of RNA-seq data using Galaxy
2020 Damiani, C; Rovida, L; Maspero, D; Sala, I; Rosato, L; Di Filippo, M; Pescini, D; Graudenzi, A; Antoniotti, M; Mauri, G