Sfoglia per Autore
LACE: Inference of cancer evolution models from longitudinal single-cell sequencing data
2022 Ramazzotti, D; Angaroni, F; Maspero, D; Ascolani, G; Castiglioni, I; Piazza, R; Antoniotti, M; Graudenzi, A
Large-Scale Analysis of SARS-CoV-2 Synonymous Mutations Reveals the Adaptation to the Human Codon Usage During the Virus Evolution
2022 Ramazzotti, D; Angaroni, F; Maspero, D; Mauri, M; D’Aliberti, D; Fontana, D; Antoniotti, M; Elli, E; Graudenzi, A; Piazza, R
Early detection and improved genomic surveillance of SARS-CoV-2 variants from deep sequencing data
2022 Ramazzotti, D; Maspero, D; Angaroni, F; Spinelli, S; Antoniotti, M; Piazza, R; Graudenzi, A
The co-evolution of the genome and epigenome in colorectal cancer
2022 Heide, T; Househam, J; Cresswell, G; Spiteri, I; Lynn, C; Mossner, M; Kimberley, C; Fernandez-Mateos, J; Chen, B; Zapata, L; James, C; Barozzi, I; Chkhaidze, K; Nichol, D; Gunasri, V; Berner, A; Schmidt, M; Lakatos, E; Baker, A; Costa, H; Mitchinson, M; Piazza, R; Jansen, M; Caravagna, G; Ramazzotti, D; Shibata, D; Bridgewater, J; Rodriguez-Justo, M; Magnani, L; Graham, T; Sottoriva, A
Variant calling from scRNA-seq data allows the assessment of cellular identity in patient-derived cell lines
2022 Ramazzotti, D; Angaroni, F; Maspero, D; Ascolani, G; Castiglioni, I; Piazza, R; Antoniotti, M; Graudenzi, A
Mutational signatures and heterogeneous host response revealed via large-scale characterization of SARS-CoV-2 genomic diversity
2021 Graudenzi, A; Maspero, D; Angaroni, F; Piazza, R; Ramazzotti, D
Learning the structure of Bayesian Networks via the bootstrap
2021 Caravagna, G; Ramazzotti, D
Investigating the performance of multi-objective optimization when learning Bayesian Networks
2021 Nobile, M; Cazzaniga, P; Ramazzotti, D
De novo mutational signature discovery in tumor genomes using SparseSignatures
2021 Lal, A; Liu, K; Tibshirani, R; Sidow, A; Ramazzotti, D
VERSO: a comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples
2021 Ramazzotti., D; Angaroni, F; Maspero, D; Gambacorti-Passerini, C; Antoniotti, M; Graudenzi, A; Piazza, R
VirMutSig: Discovery and assignment of viral mutational signatures from sequencing data
2021 Maspero, D; Angaroni, F; Porro, D; Piazza, R; Graudenzi, A; Ramazzotti, D
VERSO:A COMPREHENSIVE FRAMEWORK FOR THE INFERENCE OF ROBUST PHYLOGENIES AND THE QUANTIFICATION OF INTRA-HOST GENOMIC DIVERSITY OF VIRAL SAMPLES
2020 Ramazzotti, D; Angaroni, F; Maspero, D; Gambacorti-Passerini, C; Antoniotti, M; Graudenzi, A; Piazza, R
Characterization of intra-host SARS-CoV-2 variants improves phylogenomic reconstruction and may reveal functionally convergent mutations
2020 Ramazzotti, D; Angaroni, F; Maspero, D; Gambacorti-Passerini, C; Antoniotti, M; Graudenzi, A; Piazza, R
Correction to: Exposing the probabilistic causal structure of discrimination (International Journal of Data Science and Analytics, (2017), 3, 1, (1-21), 10.1007/s41060-016-0040-z)
2020 Bonchi, F; Hajian, S; Mishra, B; Ramazzotti, D
Longitudinal cancer evolution from single cells
2020 Ramazzotti, D; Angaroni, F; Maspero, D; Ascolani, G; Castiglioni, I; Piazza, R; Antoniotti, M; Graudenzi, A
Integrated Genomic, Functional, and Prognostic Characterization of Atypical Chronic Myeloid Leukemia
2020 Fontana, D; Ramazzotti, D; Aroldi, A; Redaelli, S; Magistroni, V; Pirola, A; Niro, A; Massimino, L; Mastini, C; Brambilla, V; Bombelli, S; Bungaro, S; Morotti, A; Rea, D; Stagno, F; Martino, B; Campiotti, L; Caocci, G; Usala, E; Merli, M; Onida, F; Bregni, M; Elli, E; Fumagalli, M; Ciceri, F; Perego, R; Pagni, F; Mologni, L; Piazza, R; Gambacorti-Passerini, C
cyTRON and cyTRON/JS: two Cytoscape-based applications for the inference of cancer evolution models
2019 Patruno, L; Galimberti, E; Ramazzotti, D; Caravagna, G; De Sano, L; Antoniotti, M; Graudenzi, A
Improved survival of cancer patients admitted to the intensive care unit between 2002 and 2011 at a U.S. Teaching hospital
2019 Sauer, C; Dong, J; Celi, L; Ramazzotti, D
Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data
2019 Ramazzotti, D; Graudenzi, A; De Sano, L; Antoniotti, M; Caravagna, G
The Influence of Nutrients Diffusion on a Metabolism-driven Model of a Multi-cellular System
2019 Maspero, D; Damiani, C; Antoniotti, M; Graudenzi, A; Di Filippo, M; Vanoni, M; Caravagna, G; Colombo, R; Ramazzotti, D; Pescini, D
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