Bicocca Open Archive

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BONATI, LAURA
 Distribuzione geografica
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Continente #
NA - Nord America 7.613
EU - Europa 4.212
AS - Asia 2.080
SA - Sud America 100
AF - Africa 31
Continente sconosciuto - Info sul continente non disponibili 6
OC - Oceania 6
Totale 14.048
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Nazione #
US - Stati Uniti d'America 7.449
IT - Italia 882
DE - Germania 830
SG - Singapore 685
RU - Federazione Russa 652
CN - Cina 647
SE - Svezia 493
IE - Irlanda 381
UA - Ucraina 325
HK - Hong Kong 293
GB - Regno Unito 176
CA - Canada 158
VN - Vietnam 127
FI - Finlandia 115
FR - Francia 113
IN - India 105
ID - Indonesia 83
BR - Brasile 82
TR - Turchia 40
PL - Polonia 37
DK - Danimarca 34
AT - Austria 31
BE - Belgio 28
NL - Olanda 28
ES - Italia 20
KR - Corea 17
JP - Giappone 16
CH - Svizzera 15
IR - Iran 13
ZA - Sudafrica 11
HU - Ungheria 9
CZ - Repubblica Ceca 8
PT - Portogallo 8
CL - Cile 7
LK - Sri Lanka 7
PK - Pakistan 7
TN - Tunisia 7
IL - Israele 6
PH - Filippine 6
AR - Argentina 5
BG - Bulgaria 5
EU - Europa 5
MA - Marocco 5
MX - Messico 5
RO - Romania 5
AU - Australia 4
NO - Norvegia 4
AE - Emirati Arabi Uniti 3
BD - Bangladesh 3
EG - Egitto 3
MY - Malesia 3
SA - Arabia Saudita 3
SK - Slovacchia (Repubblica Slovacca) 3
UZ - Uzbekistan 3
AM - Armenia 2
EC - Ecuador 2
GR - Grecia 2
NZ - Nuova Zelanda 2
SC - Seychelles 2
SI - Slovenia 2
TH - Thailandia 2
A2 - ???statistics.table.value.countryCode.A2??? 1
AZ - Azerbaigian 1
BO - Bolivia 1
CY - Cipro 1
HR - Croazia 1
IQ - Iraq 1
IS - Islanda 1
JM - Giamaica 1
KG - Kirghizistan 1
KW - Kuwait 1
KZ - Kazakistan 1
LU - Lussemburgo 1
LV - Lettonia 1
MD - Moldavia 1
ML - Mali 1
MN - Mongolia 1
MU - Mauritius 1
NG - Nigeria 1
PE - Perù 1
PY - Paraguay 1
RS - Serbia 1
TJ - Tagikistan 1
TW - Taiwan 1
UY - Uruguay 1
Totale 14.048
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Città #
Ann Arbor 1.537
Woodbridge 638
Chandler 606
Fairfield 594
Frankfurt am Main 491
Houston 455
Singapore 452
Ashburn 376
Dublin 365
Wilmington 358
Jacksonville 353
Milan 335
Hong Kong 288
Dearborn 243
Seattle 229
Santa Clara 212
Cambridge 206
New York 172
Princeton 164
Shanghai 155
Nanjing 116
Dong Ket 78
Jakarta 78
Moscow 76
Beijing 59
Lachine 59
Altamura 54
Lawrence 52
Helsinki 47
Ottawa 41
San Diego 41
Andover 31
Boardman 30
Council Bluffs 30
Kraków 27
Brussels 26
Vienna 25
Edmonton 24
Guangzhou 24
Nanchang 24
Shenyang 24
Falls Church 23
Fremont 23
Tianjin 23
Los Angeles 22
Toronto 22
Hebei 21
Pune 21
Hefei 20
Gavirate 18
Jinan 18
Changsha 17
Mountain View 17
Jiaxing 16
London 16
Huizen 15
Grafing 14
Nürnberg 14
Rome 14
Norwalk 13
Barcelona 12
Bologna 12
Pioltello 12
Catania 11
Kunming 11
Parabiago 11
Nuremberg 10
Washington 10
Bari 9
Chicago 9
Munich 9
Rio de Janeiro 9
The Dalles 9
Zhengzhou 9
Ancona 8
Montréal 8
Prague 8
Uppsala 8
Auburn Hills 7
Colombo 7
Hangzhou 7
Maccagno 7
Perugia 7
San Francisco 7
Brooklyn 6
Budapest 6
Dallas 6
Gangnam-gu 6
Langenfeld 6
Lissone 6
Naples 6
Peschiera Borromeo 6
Pittsburgh 6
Portsmouth 6
Redmond 6
University Park 6
Warsaw 6
Amadora 5
Ankara 5
Casavatore 5
Totale 9.852
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Nome #
Molecular modeling of the AhR structure and interactions can shed light on ligand-dependent activation and transformation mechanisms 447
Modeling the binding of diverse ligands within the Ah receptor ligand binding domain 381
Exploring the PXR ligand binding mechanism with advanced Molecular Dynamics methods 371
Ligand-induced perturbation of the HIF-2α:ARNT dimer dynamics 355
Functional annotation of the mesophilic-like character of mutants in a cold-adapted enzyme by self-organising map analysis of their molecular dynamics 351
Modeling Binding with Large Conformational Changes: Key Points in Ensemble-Docking Approaches 313
Role of dynamics in ligand-protein interactions: modelling of binding to the pregnane x receptor 277
Docking to homology models highlights the molecular determinants of ligand binding to the AhR 269
Complementarietà di metodi di modellistica molecolare e di bioinformatica strutturale nello studio di struttura e funzione di proteine 236
A selected bibliography on PCDD and PCDF formation 232
Design of gliadin peptide analogues with low affinity for the celiac disease associated HLA–DQ2 protein 198
Computational approaches to shed light on molecular mechanisms in biological processes 195
Self organizing maps to efficiently cluster and functionally interpret protein conformational ensembles 195
Chemometric approaches in environmental problems concerning PCDD and PCDF. Data interpretation and source correlation. Mechanisms of formation and destruction in MSW combustion process. 192
Ginsenosides are novel naturally-occurring aryl hydrocarbon receptor ligands 190
The combustion of Municipal Solid Wastes and PCDD and PCDF emissions. Part. 1 PCDD and PCDF in MSW 189
Structural modeling of the AhR:ARNT complex in the bHLH–PASA–PASB region elucidates the key determinants of dimerization 186
In vitro toxicity and in silico docking analysis of two novel selective AH-receptor modulators 185
Comparative in vitro and in silico analysis of the selectivity of indirubin as a human ah receptor agonist 185
Ligand binding and activation of the Ah receptor 182
Artificial Neural Networks for Efficient Clustering of Conformational Ensembles and their Potential for Medicinal Chemistry 182
Detecting similarities among distant homologous proteins by comparison of domain flexibilities 180
No dance, no partner! A tale of receptor flexibility in docking and virtual screening 176
AHR Ligands: Promiscuity in Binding and Diversity in Response 176
The toxicity equivalency factor scheme applied to municipal incinerator PCDD/PCDF emissions when specific congener information is lacking 176
The combustion of Municipal Solid Wastes and PCDD and PCDF emissions. Part. 2 PCDD and PCDF in Stack Gases 175
On the choice of the perturbed state for PMO prediction of selectivities in cycloaddition reactions 174
NURA: A curated dataset of nuclear receptor modulators 174
An aryl hydrocarbon receptor from the salamander ambystoma mexicanum exhibits low sensitivity to 2,3,7,8-tetrachlorodibenzo -p -dioxin 173
The combustion of municipal solid wastes: PCDD and PCDF in MSW in emissions. A chemometric approach. 171
Toward a mechanistic understanding of PCDD biological activity based on molecular electrostatic potential modeling 168
Conformational and functional analysis of molecular dynamics trajectories by Self-Organising Maps 166
Deciphering Dimerization Modes of PAS Domains: Computational and Experimental Analyses of the AhR:ARNT Complex Reveal New Insights Into the Mechanisms of AhR Transformation 164
New Aryl Hydrocarbon Receptor Homology Model Targeted To Improve Docking Reliability 163
Computational prediction and in vitro validation of VEGFR1 as a novel protein target for 2,3,7,8-tetrachlorodibenzo-p-dioxin 163
ZADDOCK: incorporating ab initio search into HADDOCK 160
Identification of potential aryl hydrocarbon receptor ligands by virtual screening of industrial chemicals 160
Evidence that ligand binding is a key determinant of Ah receptor-mediated transcriptional activity 159
Predicting the accuracy of protein-ligand docking on homology models 158
Molecular electrostatic potentials of substituted aromatic compounds: factors affecting the differences between ab initio and semiempirical results 158
Conservation and specialization in PAS domain dynamics 157
Structural and Functional Characterization of the Aryl Hydrocarbon Receptor Ligand Binding Domain by Homology Modeling and Mutational Analysis 157
On the role of the molecular electrostatic potential in modelling the activity of non peptide angiotensin II receptor antagonists 157
Ligand docking in AhR homology model: specificity of structurally diverse ligands interactions 155
MinSet: a general approach to derive maximally representative database subsets by using fragment dictionaries and its application to the SCOP database 154
Predicting the accuracy of protein-ligand docking on homology models 153
Specific Ligand Binding Domain Residues Confer Low Dioxin Responsiveness to AHR1β of Xenopus laevis 152
Unraveling PPI hot spots for PAS domains dimerization: the case of Aryl hydrocarbon Receptor 150
Detection of the TCDD binding-fingerprint within the Ah receptor ligand binding domain by structurally driven mutagenesis and functional analysis 149
A new methodology for the comparison of protein dynamics based on self-organizing maps 149
Comparative Analysis of Homology Models of the Ah Receptor Ligand Binding Domain: Verification of Structure-Function Predictions by Site-Directed Mutagenesis of a Nonfunctional Receptor 147
Binding specificity of diverse AhR ligands interpreted by Molecular Modeling 147
Extension of a PMO model to study the regioselectivity in 1,3 dipolar cycloadditions: reactions of 3,5 dichloro 2,4,6 trimethyl benzonitrile oxide with heteroaromatic systems 146
A comparative analysis of molecular electrostatic potentials of chlorinated dibenzo p dioxins in relation to their biological activity 145
Defining the limits of homology modeling in information-driven protein docking 140
Functional interpretation of protein conformational ensembles using self-organizing maps and network components 139
Transitional States in Ligand-Dependent Transformation of the Aryl Hydrocarbon Receptor into Its DNA-Binding Form 139
Structural and Functional Characterization of PAS Domain Dimers: the Aryl Hydrocarbon Receptor Paradigm 137
Estimation of the toxicity equivalents of PCDD/PCDF mixtures when specific congener information is lacking: a preliminary study 133
Comparison of protein flexibilities: a study case on wild type and mutants of the SH3 domain 132
BioPySDS: an Object-Oriented Interface to Manage Protein Dynamics in an Evolutionary Framework 127
A Neural Network Approach for the Identification of Pathways in Molecular Dynamics Simulations of Ligand Binding 127
Metadynamics-Based Approaches for Modeling the Hypoxia-Inducible Factor 2α Ligand Binding Process 126
An Aryl Hydrocarbon Receptor Sequence from the Caecilian Gymnopis multiplicata Exhibits Low Responsiveness to 2,3,7,8-tetrachlorodibenzo-p-dioxin 124
Conformational selection and induced fit roles in ensemble docking applications 119
Study of ligand binding to HIF-2α through Path-Metadynamics 119
Functional annotation of protein conformations by Self-Organizing Maps 115
Mechanism of a nanodevice binding to its target protein by atomistic molecular dynamics: the case of RGD-conjugated PEGylated TiO2 nanoparticles binding to integrins αVβ3 114
Structural characterization of insect trehalase and assessment of potential inhibitors 112
Deciphering the ahr:arnt dimerization process: how to assembly the functional puzzle of interacting interfaces 112
Selezione di riferimenti bibliografici relativi alla formazione di PCDD e PCDF 110
Unraveling Dimerization Interfaces of PAS Domain Dimers: Lessons from the AhR/ARNT Complex. 110
Intermolecular interactions that determine the regioselectivity in 1,3‐dipolar cycloadditions of N‐methyl‐1,3‐oxazolium‐5‐olates with N‐(phenylmethylene)benzenesulphonamide 109
Testing structure-binding predictions from comparative modeling of the AHR ligand-binding domain: Studies with zebrafish AHR1a 107
Reconstruction of ARNT PAS-B Unfolding Pathways by Steered Molecular Dynamics and Artificial Neural Networks 102
La combustione dei rifiuti solidi urbani e le emissioni di PCDD e PCDF 101
Modelling the intertwined network of ppis along the ahr:arnt dimer 98
The cellular and molecular determinants of naphthoquinone-dependent activation of the aryl hydrocarbon receptor 98
Modelling ligands/Aryl hydrocarbon Receptor binding interactions 96
Metadynamics simulations for the investigation of drug loading on functionalized inorganic nanoparticles 94
Unveiling the inhibition mechanism of HIF-2α:ARNT dimerization by protein dynamics investigation 93
Specific amino acid residues within the ligand binding domain confer low responsiveness to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) to an aryl hydrocarbon receptor (AHR) from the frog Xenopus Laevis 90
Mechanism of RGD-conjugated nanodevice binding to its target protein integrin αVβ3 by atomistic molecular dynamics and machine learning 87
Modeling of Ligand Binding to the HIF-2α Protein with Enhanced Sampling Methods 86
Molecular Dynamics for the Optimal Design of Functionalized Nanodevices to Target Folate Receptors on Tumor Cells 79
An aryl hydrocarbon receptor from the caecilian Gymnopis multiplicata suggests low dioxin affinity in the ancestor of all three amphibian orders 75
PathDetect-SOM: A Neural Network Approach for the Identification of Pathways in Ligand Binding Simulations 71
Molecular Dynamics for the Optimal Design of Functionalized Nanodevices to Target Folate Receptors on Tumor Cells 70
Drug Design in the Exascale Era: A Perspective from Massively Parallel QM/MM Simulations 54
Aryl Hydrocarbon Receptor-Dependent and-Independent Pathways Mediate Curcumin Anti-Aging Effects 51
TCDD-Induced Allosteric Perturbation of the AhR:ARNT Binding to DNA 47
Self-organizing maps of unbiased ligand-target binding pathways and kinetics 44
The AhR Signaling Mechanism: A Structural Point of View 41
Totale 14.551
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Categoria #
all - tutte 50.556
article - articoli 0
book - libri 0
conference - conferenze 0
curatela - curatele 0
other - altro 0
patent - brevetti 0
selected - selezionate 0
volume - volumi 0
Totale 50.556
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Totale Lug Ago Sett Ott Nov Dic Gen Feb Mar Apr Mag Giu
2019/2020182 0 0 0 0 0 0 0 0 0 0 133 49
2020/20211.655 100 78 159 174 115 106 142 135 145 175 100 226
2021/20221.127 80 147 149 82 34 88 65 27 58 89 111 197
2022/20232.285 208 624 242 215 179 347 29 138 164 15 59 65
2023/20241.556 74 75 74 98 179 362 294 68 97 25 39 171
2024/20252.729 196 356 179 196 256 203 157 214 257 444 271 0
Totale 14.551