Bicocca Open Archive

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BONATI, LAURA
 Distribuzione geografica
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Continente #
NA - Nord America 7.539
EU - Europa 4.182
AS - Asia 2.011
SA - Sud America 100
AF - Africa 30
Continente sconosciuto - Info sul continente non disponibili 6
OC - Oceania 6
Totale 13.874
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Nazione #
US - Stati Uniti d'America 7.380
IT - Italia 875
DE - Germania 827
SG - Singapore 666
RU - Federazione Russa 652
CN - Cina 628
SE - Svezia 492
IE - Irlanda 381
UA - Ucraina 325
HK - Hong Kong 270
GB - Regno Unito 169
CA - Canada 157
VN - Vietnam 127
FR - Francia 113
FI - Finlandia 110
IN - India 102
ID - Indonesia 83
BR - Brasile 82
TR - Turchia 39
DK - Danimarca 34
PL - Polonia 33
AT - Austria 31
BE - Belgio 28
NL - Olanda 25
ES - Italia 20
KR - Corea 17
CH - Svizzera 15
JP - Giappone 15
IR - Iran 13
ZA - Sudafrica 10
HU - Ungheria 9
CZ - Repubblica Ceca 8
PT - Portogallo 8
CL - Cile 7
LK - Sri Lanka 7
PK - Pakistan 7
TN - Tunisia 7
IL - Israele 6
PH - Filippine 6
AR - Argentina 5
BG - Bulgaria 5
EU - Europa 5
MA - Marocco 5
RO - Romania 5
AU - Australia 4
NO - Norvegia 4
EG - Egitto 3
MY - Malesia 3
SA - Arabia Saudita 3
SK - Slovacchia (Repubblica Slovacca) 3
UZ - Uzbekistan 3
AM - Armenia 2
BD - Bangladesh 2
EC - Ecuador 2
GR - Grecia 2
NZ - Nuova Zelanda 2
SC - Seychelles 2
SI - Slovenia 2
TH - Thailandia 2
A2 - ???statistics.table.value.countryCode.A2??? 1
AE - Emirati Arabi Uniti 1
AZ - Azerbaigian 1
BO - Bolivia 1
CY - Cipro 1
HR - Croazia 1
IQ - Iraq 1
IS - Islanda 1
JM - Giamaica 1
KG - Kirghizistan 1
KW - Kuwait 1
KZ - Kazakistan 1
LU - Lussemburgo 1
LV - Lettonia 1
MD - Moldavia 1
ML - Mali 1
MN - Mongolia 1
MU - Mauritius 1
MX - Messico 1
NG - Nigeria 1
PE - Perù 1
PY - Paraguay 1
RS - Serbia 1
TJ - Tagikistan 1
TW - Taiwan 1
UY - Uruguay 1
Totale 13.874
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Città #
Ann Arbor 1.537
Woodbridge 638
Chandler 606
Fairfield 594
Frankfurt am Main 491
Houston 455
Singapore 434
Ashburn 373
Dublin 365
Wilmington 358
Jacksonville 353
Milan 333
Hong Kong 265
Dearborn 243
Seattle 226
Santa Clara 211
Cambridge 206
New York 168
Princeton 164
Shanghai 155
Nanjing 116
Dong Ket 78
Jakarta 78
Moscow 76
Lachine 59
Beijing 58
Altamura 54
Lawrence 52
Helsinki 47
Ottawa 41
San Diego 41
Andover 31
Boardman 30
Council Bluffs 30
Kraków 27
Brussels 26
Vienna 25
Edmonton 24
Nanchang 24
Shenyang 24
Falls Church 23
Fremont 23
Guangzhou 23
Tianjin 23
Toronto 22
Hebei 21
Pune 21
Gavirate 18
Jinan 18
Changsha 17
Los Angeles 17
Mountain View 17
Jiaxing 16
Huizen 15
Grafing 14
London 14
Nürnberg 14
Rome 14
Norwalk 13
Barcelona 12
Bologna 12
Pioltello 12
Catania 11
Kunming 11
Parabiago 11
Nuremberg 10
Washington 10
Chicago 9
Rio de Janeiro 9
Zhengzhou 9
Ancona 8
Bari 8
Montréal 8
Prague 8
Uppsala 8
Auburn Hills 7
Colombo 7
Hangzhou 7
Maccagno 7
Perugia 7
Budapest 6
Gangnam-gu 6
Langenfeld 6
Lissone 6
Munich 6
Naples 6
Peschiera Borromeo 6
Portsmouth 6
Redmond 6
University Park 6
Amadora 5
Casavatore 5
Chengdu 5
Fuzhou 5
Kiev 5
Manila 5
Miami 5
Ningbo 5
Pittsburgh 5
Sacramento 5
Totale 9.760
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Nome #
Molecular modeling of the AhR structure and interactions can shed light on ligand-dependent activation and transformation mechanisms 445
Modeling the binding of diverse ligands within the Ah receptor ligand binding domain 380
Exploring the PXR ligand binding mechanism with advanced Molecular Dynamics methods 370
Ligand-induced perturbation of the HIF-2α:ARNT dimer dynamics 354
Functional annotation of the mesophilic-like character of mutants in a cold-adapted enzyme by self-organising map analysis of their molecular dynamics 350
Modeling Binding with Large Conformational Changes: Key Points in Ensemble-Docking Approaches 311
Role of dynamics in ligand-protein interactions: modelling of binding to the pregnane x receptor 276
Docking to homology models highlights the molecular determinants of ligand binding to the AhR 268
Complementarietà di metodi di modellistica molecolare e di bioinformatica strutturale nello studio di struttura e funzione di proteine 232
A selected bibliography on PCDD and PCDF formation 231
Design of gliadin peptide analogues with low affinity for the celiac disease associated HLA–DQ2 protein 197
Computational approaches to shed light on molecular mechanisms in biological processes 194
Self organizing maps to efficiently cluster and functionally interpret protein conformational ensembles 194
Chemometric approaches in environmental problems concerning PCDD and PCDF. Data interpretation and source correlation. Mechanisms of formation and destruction in MSW combustion process. 191
The combustion of Municipal Solid Wastes and PCDD and PCDF emissions. Part. 1 PCDD and PCDF in MSW 188
Ginsenosides are novel naturally-occurring aryl hydrocarbon receptor ligands 188
Structural modeling of the AhR:ARNT complex in the bHLH–PASA–PASB region elucidates the key determinants of dimerization 185
In vitro toxicity and in silico docking analysis of two novel selective AH-receptor modulators 184
Comparative in vitro and in silico analysis of the selectivity of indirubin as a human ah receptor agonist 184
Artificial Neural Networks for Efficient Clustering of Conformational Ensembles and their Potential for Medicinal Chemistry 181
Ligand binding and activation of the Ah receptor 180
Detecting similarities among distant homologous proteins by comparison of domain flexibilities 179
AHR Ligands: Promiscuity in Binding and Diversity in Response 175
The toxicity equivalency factor scheme applied to municipal incinerator PCDD/PCDF emissions when specific congener information is lacking 174
The combustion of Municipal Solid Wastes and PCDD and PCDF emissions. Part. 2 PCDD and PCDF in Stack Gases 174
No dance, no partner! A tale of receptor flexibility in docking and virtual screening 173
On the choice of the perturbed state for PMO prediction of selectivities in cycloaddition reactions 173
An aryl hydrocarbon receptor from the salamander ambystoma mexicanum exhibits low sensitivity to 2,3,7,8-tetrachlorodibenzo -p -dioxin 172
The combustion of municipal solid wastes: PCDD and PCDF in MSW in emissions. A chemometric approach. 170
NURA: A curated dataset of nuclear receptor modulators 170
Toward a mechanistic understanding of PCDD biological activity based on molecular electrostatic potential modeling 166
Conformational and functional analysis of molecular dynamics trajectories by Self-Organising Maps 165
New Aryl Hydrocarbon Receptor Homology Model Targeted To Improve Docking Reliability 162
Deciphering Dimerization Modes of PAS Domains: Computational and Experimental Analyses of the AhR:ARNT Complex Reveal New Insights Into the Mechanisms of AhR Transformation 162
Computational prediction and in vitro validation of VEGFR1 as a novel protein target for 2,3,7,8-tetrachlorodibenzo-p-dioxin 162
Identification of potential aryl hydrocarbon receptor ligands by virtual screening of industrial chemicals 159
Evidence that ligand binding is a key determinant of Ah receptor-mediated transcriptional activity 157
Molecular electrostatic potentials of substituted aromatic compounds: factors affecting the differences between ab initio and semiempirical results 157
Conservation and specialization in PAS domain dynamics 156
Predicting the accuracy of protein-ligand docking on homology models 156
Structural and Functional Characterization of the Aryl Hydrocarbon Receptor Ligand Binding Domain by Homology Modeling and Mutational Analysis 155
ZADDOCK: incorporating ab initio search into HADDOCK 155
On the role of the molecular electrostatic potential in modelling the activity of non peptide angiotensin II receptor antagonists 155
Ligand docking in AhR homology model: specificity of structurally diverse ligands interactions 154
MinSet: a general approach to derive maximally representative database subsets by using fragment dictionaries and its application to the SCOP database 152
Predicting the accuracy of protein-ligand docking on homology models 152
Specific Ligand Binding Domain Residues Confer Low Dioxin Responsiveness to AHR1β of Xenopus laevis 151
Unraveling PPI hot spots for PAS domains dimerization: the case of Aryl hydrocarbon Receptor 149
A new methodology for the comparison of protein dynamics based on self-organizing maps 148
Detection of the TCDD binding-fingerprint within the Ah receptor ligand binding domain by structurally driven mutagenesis and functional analysis 147
Comparative Analysis of Homology Models of the Ah Receptor Ligand Binding Domain: Verification of Structure-Function Predictions by Site-Directed Mutagenesis of a Nonfunctional Receptor 146
Binding specificity of diverse AhR ligands interpreted by Molecular Modeling 146
Extension of a PMO model to study the regioselectivity in 1,3 dipolar cycloadditions: reactions of 3,5 dichloro 2,4,6 trimethyl benzonitrile oxide with heteroaromatic systems 145
A comparative analysis of molecular electrostatic potentials of chlorinated dibenzo p dioxins in relation to their biological activity 141
Defining the limits of homology modeling in information-driven protein docking 139
Transitional States in Ligand-Dependent Transformation of the Aryl Hydrocarbon Receptor into Its DNA-Binding Form 138
Functional interpretation of protein conformational ensembles using self-organizing maps and network components 137
Structural and Functional Characterization of PAS Domain Dimers: the Aryl Hydrocarbon Receptor Paradigm 136
Estimation of the toxicity equivalents of PCDD/PCDF mixtures when specific congener information is lacking: a preliminary study 132
Comparison of protein flexibilities: a study case on wild type and mutants of the SH3 domain 131
BioPySDS: an Object-Oriented Interface to Manage Protein Dynamics in an Evolutionary Framework 126
A Neural Network Approach for the Identification of Pathways in Molecular Dynamics Simulations of Ligand Binding 126
An Aryl Hydrocarbon Receptor Sequence from the Caecilian Gymnopis multiplicata Exhibits Low Responsiveness to 2,3,7,8-tetrachlorodibenzo-p-dioxin 123
Metadynamics-Based Approaches for Modeling the Hypoxia-Inducible Factor 2α Ligand Binding Process 122
Conformational selection and induced fit roles in ensemble docking applications 118
Study of ligand binding to HIF-2α through Path-Metadynamics 116
Functional annotation of protein conformations by Self-Organizing Maps 114
Structural characterization of insect trehalase and assessment of potential inhibitors 111
Deciphering the ahr:arnt dimerization process: how to assembly the functional puzzle of interacting interfaces 111
Selezione di riferimenti bibliografici relativi alla formazione di PCDD e PCDF 109
Unraveling Dimerization Interfaces of PAS Domain Dimers: Lessons from the AhR/ARNT Complex. 109
Intermolecular interactions that determine the regioselectivity in 1,3‐dipolar cycloadditions of N‐methyl‐1,3‐oxazolium‐5‐olates with N‐(phenylmethylene)benzenesulphonamide 108
Mechanism of a nanodevice binding to its target protein by atomistic molecular dynamics: the case of RGD-conjugated PEGylated TiO2 nanoparticles binding to integrins αVβ3 106
Testing structure-binding predictions from comparative modeling of the AHR ligand-binding domain: Studies with zebrafish AHR1a 106
Reconstruction of ARNT PAS-B Unfolding Pathways by Steered Molecular Dynamics and Artificial Neural Networks 101
La combustione dei rifiuti solidi urbani e le emissioni di PCDD e PCDF 100
Modelling the intertwined network of ppis along the ahr:arnt dimer 97
The cellular and molecular determinants of naphthoquinone-dependent activation of the aryl hydrocarbon receptor 97
Modelling ligands/Aryl hydrocarbon Receptor binding interactions 95
Unveiling the inhibition mechanism of HIF-2α:ARNT dimerization by protein dynamics investigation 92
Metadynamics simulations for the investigation of drug loading on functionalized inorganic nanoparticles 89
Specific amino acid residues within the ligand binding domain confer low responsiveness to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) to an aryl hydrocarbon receptor (AHR) from the frog Xenopus Laevis 89
Modeling of Ligand Binding to the HIF-2α Protein with Enhanced Sampling Methods 83
Mechanism of RGD-conjugated nanodevice binding to its target protein integrin αVβ3 by atomistic molecular dynamics and machine learning 82
Molecular Dynamics for the Optimal Design of Functionalized Nanodevices to Target Folate Receptors on Tumor Cells 76
An aryl hydrocarbon receptor from the caecilian Gymnopis multiplicata suggests low dioxin affinity in the ancestor of all three amphibian orders 74
Molecular Dynamics for the Optimal Design of Functionalized Nanodevices to Target Folate Receptors on Tumor Cells 65
PathDetect-SOM: A Neural Network Approach for the Identification of Pathways in Ligand Binding Simulations 62
Drug Design in the Exascale Era: A Perspective from Massively Parallel QM/MM Simulations 51
TCDD-Induced Allosteric Perturbation of the AhR:ARNT Binding to DNA 45
Aryl Hydrocarbon Receptor-Dependent and-Independent Pathways Mediate Curcumin Anti-Aging Effects 45
The AhR Signaling Mechanism: A Structural Point of View 38
Self-organizing maps of unbiased ligand-target binding pathways and kinetics 37
Totale 14.377
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Categoria #
all - tutte 49.545
article - articoli 0
book - libri 0
conference - conferenze 0
curatela - curatele 0
other - altro 0
patent - brevetti 0
selected - selezionate 0
volume - volumi 0
Totale 49.545
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Totale Lug Ago Sett Ott Nov Dic Gen Feb Mar Apr Mag Giu
2019/2020182 0 0 0 0 0 0 0 0 0 0 133 49
2020/20211.655 100 78 159 174 115 106 142 135 145 175 100 226
2021/20221.127 80 147 149 82 34 88 65 27 58 89 111 197
2022/20232.285 208 624 242 215 179 347 29 138 164 15 59 65
2023/20241.556 74 75 74 98 179 362 294 68 97 25 39 171
2024/20252.555 196 356 179 196 256 203 157 214 257 444 97 0
Totale 14.377