Sfoglia per Autore
MaREA4Galaxy: metabolic reaction enrichment analysis and visualization of RNA-seq data using Galaxy
2020 Damiani, C; Rovida, L; Maspero, D; Sala, I; Rosato, L; Di Filippo, M; Pescini, D; Graudenzi, A; Antoniotti, M; Mauri, G
FBCA, A multiscale modeling framework combining cellular automata and flux balance analysis
2020 Graudenzi, A; Maspero, D; Damiani, C
Global Sensitivity Analysis of Constraint-Based Metabolic Models
2020 Damiani, C; Pescini, D; Nobile, M
Integration of single-cell RNA-seq data into population models to characterize cancer metabolism
2019 Damiani, C; Maspero, D; Di Filippo, M; Colombo, R; Pescini, D; Graudenzi, A; Westerhoff, H; Alberghina, L; Vanoni, M; Mauri, G
Synchronization effects in a metabolism-driven model of multi-cellular system
2019 Maspero, D; Graudenzi, A; AMARPAL SINGH, A; Pescini, D; Mauri, G; Antoniotti, M; Damiani, C
The Influence of Nutrients Diffusion on a Metabolism-driven Model of a Multi-cellular System
2019 Maspero, D; Damiani, C; Antoniotti, M; Graudenzi, A; Di Filippo, M; Vanoni, M; Caravagna, G; Colombo, R; Ramazzotti, D; Pescini, D
Emerging ensembles of kinetic parameters to characterize observed metabolic phenotypes
2018 Colombo, R; Damiani, C; Gilbert, D; Heiner, M; Mauri, G; Pescini, D
Modeling Spatio-Temporal Dynamics of Metabolic Networks with Cellular Automata and Constraint-Based Methods
2018 Graudenzi, A; Maspero, D; Damiani, C
Omics and Clinical Data Integration
2018 De Sanctis, G; Colombo, R; Damiani, C; Sacco, E; Vanoni, M
Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power
2018 Graudenzi, A; Maspero, D; Di Filippo, M; Gnugnoli, M; Isella, C; Mauri, G; Medico, E; Antoniotti, M; Damiani, C
Linking alterations in metabolic fluxes with shifts in metabolite levels by means of kinetic modeling
2017 Damiani, C; Colombo, R; Di Filippo, M; Pescini, D; Mauri, G
Constraining mechanism based simulations to identify ensembles of parametrizations to characterize metabolic features
2017 Colombo, R; Damiani, C; Mauri, G; Pescini, D
COSYS: A computational infrastructure for systems biology
2017 Cumbo, F; Nobile, M; Damiani, C; Colombo, R; Mauri, G; Cazzaniga, P
A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect
2017 Damiani, C; Colombo, R; Gaglio, D; Mastroianni, F; Pescini, D; Westerhoff, H; Mauri, G; Vanoni, M; Alberghina, L
Constraint-based modeling and simulation of cell populations
2017 Di Filippo, M; Damiani, C; Colombo, R; Pescini, D; Mauri, G
Dynamical regimes in non-ergodic random Boolean networks
2017 Villani, M; Campioli, D; Damiani, C; Roli, A; Filisetti, A; Serra, A
popFBA: tackling intratumour heterogeneity with Flux Balance Analysis
2017 Damiani, C; Di Filippo, M; Pescini, D; Maspero, D; Colombo, R; Mauri, G
CABeRNET: A Cytoscape app for augmented Boolean models of gene regulatory NETworks
2016 Paroni, A; Graudenzi, A; Caravagna, G; Damiani, C; Mauri, G; Antoniotti, M
Divergent in vitro/in vivo responses to drug treatments of highly aggressive NIH-Ras cancer cells: A PET imaging and metabolomics-mass-spectrometry study
2016 Gaglio, D; Valtorta, S; Ripamonti, M; Bonanomi, M; Damiani, C; Todde, S; Negri, A; Sanvito, F; Mastroianni, F; Di Campli, A; Turacchio, G; Di Grigoli, G; Belloli, S; Luini, A; Gilardi, M; Colangelo, A; Alberghina, L; Moresco, R
Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models
2016 DI FILIPPO, M; Colombo, R; Damiani, C; Pescini, D; Gaglio, D; Vanoni, M; Alberghina, L; Mauri, G
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