RIZZI, RAFFAELLA
RIZZI, RAFFAELLA
DIPARTIMENTO DI INFORMATICA, SISTEMISTICA E COMUNICAZIONE
Can Formal Languages Help Pangenomics to Represent and Analyze Multiple Genomes?
2022 Bonizzoni, P; De Felice, C; Pirola, Y; Rizzi, R; Zaccagnino, R; Zizza, R
KFinger: Capturing Overlaps Between Long Reads by Using Lyndon Fingerprints
2022 Bonizzoni, P; Petescia, A; Pirola, Y; Rizzi, R; Zaccagnino, R; Zizza, R
Computational graph pangenomics: a tutorial on data structures and their applications
2022 Baaijens, J; Bonizzoni, P; Boucher, C; Della Vedova, G; Pirola, Y; Rizzi, R; Sirén, J
Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches
2022 Bonizzoni, P; Costantini, M; De Felice, C; Petescia, A; Pirola, Y; Previtali, M; Rizzi, R; Stoye, J; Zaccagnino, R; Zizza, R
Can We Replace Reads by Numeric Signatures? Lyndon Fingerprints as Representations of Sequencing Reads for Machine Learning
2021 Bonizzoni, P; De Felice, C; Petescia, A; Pirola, Y; Rizzi, R; Stoye, J; Zaccagnino, R; Zizza, R
Shark: fishing relevant reads in an RNA-Seq sample
2021 Denti, L; Pirola, Y; Previtali, M; Ceccato, T; Della Vedova, G; Rizzi, R; Bonizzoni, P
Computing the multi-string BWT and LCP array in external memory
2021 Bonizzoni, P; Della Vedova, G; Pirola, Y; Previtali, M; Rizzi, R
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era
2019 Rizzi, R; Beretta, S; Patterson, M; Pirola, Y; Previtali, M; Della Vedova, G; Bonizzoni, P
Multithread multistring burrows-wheeler transform and longest common prefix array
2019 Bonizzoni, P; Della Vedova, G; Pirola, Y; Previtali, M; Rizzi, R
ASGAL: Aligning RNA-Seq Data to a Splicing Graph to Detect Novel Alternative Splicing Events
2018 Denti, L; Rizzi, R; Beretta, S; Della Vedova, G; Previtali, M; Bonizzoni, P
Divide and conquer computation of the multi-string BWT and LCP array
2018 Bonizzoni, P; Della Vedova, G; Nicosia, S; Pirola, Y; Previtali, M; Rizzi, R
ASGAL: Aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
2018 Denti, L; Rizzi, R; Beretta, S; Vedova, G; Previtali, M; Bonizzoni, P
Mapping RNA-seq data to a transcript graph via approximate pattern matching to a hypertext
2017 Beretta, S; Bonizzoni, P; Denti, L; Previtali, M; Rizzi, R
Character-based phylogeny construction and its application to tumor evolution
2017 Della Vedova, G; Patterson, M; Rizzi, R; Soto, M
FSG: Fast String Graph Construction for de Novo Assembly
2017 Bonizzoni, P; Della Vedova, G; Pirola, Y; Previtali, M; Rizzi, R
An External-Memory Algorithm for String Graph Construction
2017 Bonizzoni, P; Della Vedova, G; Pirola, Y; Previtali, M; Rizzi, R
A colored graph approach to perfect phylogeny with persistent characters
2017 Bonizzoni, P; Carrieri, A; Della Vedova, G; Rizzi, R; Trucco, G
Species-driven persistent phylogeny
2017 Bonizzoni, P; Carrieri, A; Della Vedova, G; Rizzi, R; Trucco, G
FSG: Fast string graph construction for de novo assembly of reads data
2016 Bonizzoni, P; DELLA VEDOVA, G; Pirola, Y; Previtali, M; Rizzi, R
Protein Kinase A Activation Promotes Cancer Cell Resistance to Glucose Starvation and Anoikis
2016 Palorini, R; Votta, G; Pirola, Y; De Vitto, H; De Palma, S; Airoldi, C; Vasso, M; Ricciardiello, F; Lombardi, P; Cirulli, C; Rizzi, R; Nicotra, F; Hiller, K; Gelfi, C; Alberghina, L; Chiaradonna, F