RIZZI, RAFFAELLA
RIZZI, RAFFAELLA
DIPARTIMENTO DI INFORMATICA, SISTEMISTICA E COMUNICAZIONE
A method to detect gene structure and alternative splice sites by agreeing ESTs to a genomic sequence
2003 Bonizzoni, P; Pesole, G; Rizzi, R
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences
2005 Bonizzoni, P; Rizzi, R; Pesole, G
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization
2006 Castrignano, T; Rizzi, R; Talamo, I; D'Onorio De Meo, P; Anselmo, A; Bonizzoni, P; Pesole, G
Computational methods for alternative splicing prediction
2006 Bonizzoni, P; Pesole, G; Rizzi, R
Exemplar longest common subsequence
2007 Bonizzoni, P; DELLA VEDOVA, G; Dondi, R; Fertin, G; Rizzi, R; Vialette, S
ASPicDB: A database resource for alternative splicing analysis
2008 Castrignanò, T; D'Antonio, M; Anselmo, A; Carrabino, D; D'Onorio De Meo, A; D'Erchia, A; Licciulli, F; Mangiulli, M; Mignone, F; Pavesi, G; Picardi, E; Riva, A; Rizzi, R; Bonizzoni, P; Pesole, G
Minimum factorization agreement of spliced ests
2009 Bonizzoni, P; DELLA VEDOVA, G; Dondi, R; Pirola, Y; Rizzi, R
Detecting alternative gene structures from spliced ESTs: A computational approach
2009 Bonizzoni, P; Mauri, G; Pesole, G; Picardi, E; Pirola, Y; Rizzi, R
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing
2011 Martelli, P; D'Antonio, M; Bonizzoni, P; Castrignanò, T; D'Erchia, A; D'Onorio De Meo, P; Fariselli, P; Finelli, M; Licciulli, F; Mangiulli, M; Mignone, F; Pavesi, G; Picardi, E; Rizzi, R; Rossi, I; Valletti, A; Zauli, A; Zambelli, F; Casadio, R; Pesole, G
PIntron: A fast method for gene structure prediction via maximal pairings of a pattern and a text
2011 Bonizzoni, P; DELLA VEDOVA, G; Pirola, Y; Rizzi, R
Reconstructing isoform graphs from RNA-Seq data
2012 Beretta, S; Bonizzoni, P; Rizzi, R; DELLA VEDOVA, G
PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text
2012 Pirola, Y; Rizzi, R; Picardi, E; Pesole, G; DELLA VEDOVA, G; Bonizzoni, P
Constructing String Graphs in External Memory
2014 Bonizzoni, P; DELLA VEDOVA, G; Pirola, Y; Previtali, M; Rizzi, R
Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform Graphs
2014 Beretta, S; Bonizzoni, P; DELLA VEDOVA, G; Pirola, Y; Rizzi, R
Transcriptome assembly and alternative splicing analysis
2015 Bonizzoni, P; DELLA VEDOVA, G; Pesole, G; Picardi, E; Pirola, Y; Rizzi, R
FSG: Fast string graph construction for de novo assembly of reads data
2016 Bonizzoni, P; DELLA VEDOVA, G; Pirola, Y; Previtali, M; Rizzi, R
Protein Kinase A Activation Promotes Cancer Cell Resistance to Glucose Starvation and Anoikis
2016 Palorini, R; Votta, G; Pirola, Y; De Vitto, H; De Palma, S; Airoldi, C; Vasso, M; Ricciardiello, F; Lombardi, P; Cirulli, C; Rizzi, R; Nicotra, F; Hiller, K; Gelfi, C; Alberghina, L; Chiaradonna, F
LSG: An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly
2016 Bonizzoni, P; DELLA VEDOVA, G; Pirola, Y; Previtali, M; Rizzi, R
Mapping RNA-seq data to a transcript graph via approximate pattern matching to a hypertext
2017 Beretta, S; Bonizzoni, P; Denti, L; Previtali, M; Rizzi, R
FSG: Fast String Graph Construction for de Novo Assembly
2017 Bonizzoni, P; Della Vedova, G; Pirola, Y; Previtali, M; Rizzi, R