CICCOLELLA, SIMONE
CICCOLELLA, SIMONE
DIPARTIMENTO DI INFORMATICA, SISTEMISTICA E COMUNICAZIONE
RecGraph: recombination-aware alignment of sequences to variation graphs
2024 Avila Cartes, J; Bonizzoni, P; Ciccolella, S; Della Vedova, G; Denti, L; Didelot, X; Monti, D; Pirola, Y
Accurate and fast clade assignment via deep learning and frequency chaos game representation
2023 Avila Cartes, J; Anand, S; Ciccolella, S; Bonizzoni, P; Della Vedova, G
Three Metaheuristic Approaches for Tumor Phylogeny Inference: An Experimental Comparison
2023 Ciccolella, S; Della Vedova, G; Filipović, V; Soto Gomez, M
Clustering SARS-CoV-2 Variants from Raw High-Throughput Sequencing Reads Data
2022 Chourasia, P; Ali, S; Ciccolella, S; Della Vedova, G; Patterson, M
Practical algorithms for Computational Phylogenetics
2022 Ciccolella, S
Effective Clustering for Single Cell Sequencing Cancer Data
2021 Ciccolella, S; Patterson, M; Bonizzoni, P; Della Vedova, G
Inferring Cancer Progression from Single-Cell Sequencing while Allowing Mutation Losses
2021 Ciccolella, S; Ricketts, C; Soto Gomez, M; Patterson, M; Silverbush, D; Bonizzoni, P; Hajirasouliha, I; Della Vedova, G
MALVIRUS: an integrated application for viral variant analysis
2021 Ciccolella, S; Denti, L; Bonizzoni, P; Della Vedova, G; Pirola, Y; Previtali, M
Simpler and Faster Development of Tumor Phylogeny Pipelines
2021 Ali, S; Ciccolella, S; Lucarella, L; Della Vedova, G; Patterson, M
Triplet-based similarity score for fully multi-labeled trees with poly-occurring labels
2021 Ciccolella, S; Bernardini, G; Denti, L; Bonizzoni, P; Previtali, M; Vedova, G
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data
2020 Ciccolella, S; Soto Gomez, M; Patterson, M; Della Vedova, G; Hajirasouliha, I; Bonizzoni, P
Does Relaxing the Infinite Sites Assumption Give Better Tumor Phylogenies? An ILP-Based Comparative Approach
2019 Bonizzoni, P; Ciccolella, S; Della Vedova, G; Soto Gomez, M
Effective clustering for single cell sequencing cancer data
2019 Ciccolella, S; Patterson, M; Bonizzoni, P; Della Vedova, G
PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data
2019 Malikic, S; Mehrabadi, F; Ciccolella, S; Rahman, M; Ricketts, C; Haghshenas, E; Seidman, D; Hach, F; Hajirasouliha, I; Sahinalp, S
GPPS: an ILP-based approach for inferring cancer progression with mutation losses from single cell data
2018 Ciccolella, S; Gomez, M; Patterson, M; Vedova, G; Hajirasouliha, I; Bonizzoni, P
Beyond Perfect phylogeny: Multisample Phylogeny reconstruction via ILP
2017 Bonizzoni, P; Della Vedova, G; Ciccolella, S; SOTO GOMEZ, M