DELLA VEDOVA, GIANLUCA
DELLA VEDOVA, GIANLUCA
DIPARTIMENTO DI INFORMATICA, SISTEMISTICA E COMUNICAZIONE
Differential analysis of alternative splicing events in gene regions using residual neural networks
2025 Ciccolella, S; Denti, L; Avila Cartes, J; Della Vedova, G; Pirola, Y; Rizzi, R; Bonizzoni, P
Plastic: An Easy to Use and Modular Tool for Benchmarking Tumor Phylogeny Reconstruction Pipelines
2025 Juyal, A; Tayebi, Z; Zelikovsky, A; Soto Gomez, M; Ciccolella, S; Della Vedova, G; Patterson, M
Differential quantification of alternative splicing events on spliced pangenome graphs
2024 Ciccolella, S; Cozzi, D; Della Vedova, G; Kuria, S; Bonizzoni, P; Denti, L
PangeBlocks: customized construction of pangenome graphs via maximal blocks
2024 Avila Cartes, J; Bonizzoni, P; Ciccolella, S; Della Vedova, G; Denti, L
RecGraph: recombination-aware alignment of sequences to variation graphs
2024 Avila Cartes, J; Bonizzoni, P; Ciccolella, S; Della Vedova, G; Denti, L; Didelot, X; Monti, D; Pirola, Y
Accurate and fast clade assignment via deep learning and frequency chaos game representation
2023 Avila Cartes, J; Anand, S; Ciccolella, S; Bonizzoni, P; Della Vedova, G
Multiallelic Maximal Perfect Haplotype Blocks with Wildcards via PBWT
2023 Bonizzoni, P; Della Vedova, G; Pirola, Y; Rizzi, R; Sgrò, M
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data
2023 Chourasia, P; Ali, S; Ciccolella, S; Della Vedova, G; Patterson, M
Three Metaheuristic Approaches for Tumor Phylogeny Inference: An Experimental Comparison
2023 Ciccolella, S; Della Vedova, G; Filipović, V; Soto Gomez, M
Clustering SARS-CoV-2 Variants from Raw High-Throughput Sequencing Reads Data
2022 Chourasia, P; Ali, S; Ciccolella, S; Della Vedova, G; Patterson, M
Computational graph pangenomics: a tutorial on data structures and their applications
2022 Baaijens, J; Bonizzoni, P; Boucher, C; Della Vedova, G; Pirola, Y; Rizzi, R; Sirén, J
Computing the multi-string BWT and LCP array in external memory
2021 Bonizzoni, P; Della Vedova, G; Pirola, Y; Previtali, M; Rizzi, R
Effective Clustering for Single Cell Sequencing Cancer Data
2021 Ciccolella, S; Patterson, M; Bonizzoni, P; Della Vedova, G
Inferring Cancer Progression from Single-Cell Sequencing while Allowing Mutation Losses
2021 Ciccolella, S; Ricketts, C; Soto Gomez, M; Patterson, M; Silverbush, D; Bonizzoni, P; Hajirasouliha, I; Della Vedova, G
MALVIRUS: an integrated application for viral variant analysis
2021 Ciccolella, S; Denti, L; Bonizzoni, P; Della Vedova, G; Pirola, Y; Previtali, M
Shark: fishing relevant reads in an RNA-Seq sample
2021 Denti, L; Pirola, Y; Previtali, M; Ceccato, T; Della Vedova, G; Rizzi, R; Bonizzoni, P
Simpler and Faster Development of Tumor Phylogeny Pipelines
2021 Ali, S; Ciccolella, S; Lucarella, L; Della Vedova, G; Patterson, M
Triplet-based similarity score for fully multi-labeled trees with poly-occurring labels
2021 Ciccolella, S; Bernardini, G; Denti, L; Bonizzoni, P; Previtali, M; Vedova, G
Beyond the Horizon of Computability : 16th Conference on Computability in Europe, CiE 2020, Fisciano, Italy, June 29–July 3, 2020, Proceedings
2020 Anselmo, M; Della Vedova, G; Manea, F; Pauly, A
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data
2020 Ciccolella, S; Soto Gomez, M; Patterson, M; Della Vedova, G; Hajirasouliha, I; Bonizzoni, P