Character-based Phylogeny Construction is a well-known combinatorial problem whose input is a matrix M and we want to compute a phylogeny that is compatible with the actual species encoded by M. In this paper we survey some of the known formulations and algorithms for some variants of this problem. Finally, we present the connections between these problems and tumor evolution, and we discuss some of the most important open problems.
Della Vedova, G., Patterson, M., Rizzi, R., Soto, M. (2017). Character-based phylogeny construction and its application to tumor evolution. In Unveiling Dynamics and Complexity (pp.3-13). Springer Verlag [10.1007/978-3-319-58741-7_1].
Character-based phylogeny construction and its application to tumor evolution
Della Vedova, G;PATTERSON, MURRAY DAN;Rizzi, R;Soto, M
2017
Abstract
Character-based Phylogeny Construction is a well-known combinatorial problem whose input is a matrix M and we want to compute a phylogeny that is compatible with the actual species encoded by M. In this paper we survey some of the known formulations and algorithms for some variants of this problem. Finally, we present the connections between these problems and tumor evolution, and we discuss some of the most important open problems.
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