Sfoglia per Autore
Modeling Spatio-Temporal Dynamics of Metabolic Networks with Cellular Automata and Constraint-Based Methods
2018 Graudenzi, A; Maspero, D; Damiani, C
Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power
2018 Graudenzi, A; Maspero, D; Di Filippo, M; Gnugnoli, M; Isella, C; Mauri, G; Medico, E; Antoniotti, M; Damiani, C
Modeling cumulative biological phenomena with Suppes-Bayes causal networks
2018 Ramazzotti, D; Graudenzi, A; Caravagna, G; Antoniotti, M
MaREA: Metabolic feature extraction, enrichment and visualization of RNAseq data
2018 Graudenzi, A; Maspero, D; Isella, C; Di Filippo, M; Mauri, G; Medico, E; Antoniotti, M; Damiani, C
Structural Learning of Probabilistic Graphical Models of Cumulative Phenomena
2018 Ramazzotti, D; Nobile, M; Antoniotti, M; Graudenzi, A
Pathway-based classification of breast cancer subtypes
2017 Graudenzi, A; Cava, C; Bertoli, G; Fromm, B; Flatmark, K; Mauri, G; Castiglioni, I
SpidermiR: An R/bioconductor package for integrative analysis with miRNA data
2017 Cava, C; Colaprico, A; Bertoli, G; Graudenzi, A; Silva, T; Olsen, C; Noushmehr, H; Bontempi, G; Mauri, G; Castiglioni, I
A computational framework to infer the order of accumulating mutations in individual tumors
2017 Ramazzotti, D; Graudenzi, A; De Sano, L; Antoniotti, M; Caravagna, G
A Computational Framework To Infer The Order Of Accumulating Mutations In Individual Tumors
2017 Ramazzotti, D; Graudenzi, A; De Sano, L; Antoniotti, M; Caravagna, G
CABeRNET: A Cytoscape app for augmented Boolean models of gene regulatory NETworks
2016 Paroni, A; Graudenzi, A; Caravagna, G; Damiani, C; Mauri, G; Antoniotti, M
TRONCO: An R package for the inference of cancer progression models from heterogeneous genomic data
2016 De Sano, L; Caravagna, G; Ramazzotti, D; Graudenzi, A; Mauri, G; Mishra, B; Antoniotti, M
Algorithmic methods to infer the evolutionary trajectories in cancer progression
2016 Caravagna, G; Graudenzi, A; Ramazzotti, D; Sanz Pamplona, R; De Sano, L; Mauri, G; Moreno, V; Antoniotti, M; Mishra, B
Design of the TRONCO bioconductor package for TRanslational ONCOlogy
2016 Antoniotti, M; Caravagna, G; De Sano, L; Graudenzi, A; Mauri, G; Mishra, B; Ramazzotti, D
Ordering cancer mutational profiles of cross-sectional copy number alterations
2016 Graudenzi, A; Caravagna, G; Bocicor, I; Cava, C; Antoniotti, M; Mauri, G
CAPRI: Efficient Inference of Cancer Progression Models from Cross-sectional Data
2015 Ramazzotti, D; Caravagna, G; Olde Loohuis, L; Graudenzi, A; Korsunsky, I; Mauri, G; Antoniotti, M; Mishra, B
Cognac: A chaste plugin for the multiscale simulation of gene regulatory networks driving the spatial dynamics of tissues and cancer
2015 Rubinacci, S; Graudenzi, A; Caravagna, G; Mauri, G; Osborne, J; Pitt Francis, J; Antoniotti, M
Investigating the Role of Network Topology and Dynamical Regimes on the Dynamics of a Cell Differentiation Model
2014 Graudenzi, A; Damiani, C; Paroni, A; Filisetti, A; Villani, M; Serra, R; Antoniotti, M
On RAF Sets and Autocatalytic Cycles in Random Reaction Networks
2014 Filisetti, A; Villani, M; Damiani, C; Graudenzi, A; Roli, A; Hordijk, W; Serra, R
Investigating the relation between stochastic differentiation and homeostasis in intestinal crypts via multiscale modeling
2014 Graudenzi, A; Caravagna, G; De Matteis, G; Antoniotti, M
Growth and division in a dynamic protocell model
2014 Villani, M; Filisetti, A; Graudenzi, A; Damiani, C; Carletti, T; Serra, R
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