Sfoglia per Autore
Minimizer Sketches of Lyndon-Fingerprints: A Novel Approach to Compute Overlaps Among Long Reads
2025 Masri, O; Pirola, Y; Borghi, C; Bonizzoni, P; Rizzi, R
Phasing Data from Genotype Queries via the µ-PBWT
2025 Cozzi, D; Bonizzoni, P; Boucher, C; Langmead, B; Pirola, Y
Identification of Chimeric RNAs: A Novel Machine Learning Perspective
2025 Bonizzoni, P; De Felice, C; Pirola, Y; Rizzi, R; Zaccagnino, R; Zizza, R
Differential analysis of alternative splicing events in gene regions using residual neural networks
2025 Ciccolella, S; Denti, L; Avila Cartes, J; Della Vedova, G; Pirola, Y; Rizzi, R; Bonizzoni, P
RecGraph: recombination-aware alignment of sequences to variation graphs
2024 Avila Cartes, J; Bonizzoni, P; Ciccolella, S; Della Vedova, G; Denti, L; Didelot, X; Monti, D; Pirola, Y
Solving the Minimal Positional Substring Cover Problem in Sublinear Space
2024 Bonizzoni, P; Boucher, C; Cozzi, D; Gagie, T; Pirola, Y
Identification of Chimeric RNAs: a novel machine learning perspective
2023 Bonizzoni, P; De Felice, C; Pirola, Y; Rizzi, R; Zaccagnino, R; Zizza, R
Multiallelic Maximal Perfect Haplotype Blocks with Wildcards via PBWT
2023 Bonizzoni, P; Della Vedova, G; Pirola, Y; Rizzi, R; Sgrò, M
KFinger: Capturing Overlaps Between Long Reads by Using Lyndon Fingerprints
2022 Bonizzoni, P; Petescia, A; Pirola, Y; Rizzi, R; Zaccagnino, R; Zizza, R
Can Formal Languages Help Pangenomics to Represent and Analyze Multiple Genomes?
2022 Bonizzoni, P; De Felice, C; Pirola, Y; Rizzi, R; Zaccagnino, R; Zizza, R
Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches
2022 Bonizzoni, P; Costantini, M; De Felice, C; Petescia, A; Pirola, Y; Previtali, M; Rizzi, R; Stoye, J; Zaccagnino, R; Zizza, R
Computational graph pangenomics: a tutorial on data structures and their applications
2022 Baaijens, J; Bonizzoni, P; Boucher, C; Della Vedova, G; Pirola, Y; Rizzi, R; Sirén, J
Can We Replace Reads by Numeric Signatures? Lyndon Fingerprints as Representations of Sequencing Reads for Machine Learning
2021 Bonizzoni, P; De Felice, C; Petescia, A; Pirola, Y; Rizzi, R; Stoye, J; Zaccagnino, R; Zizza, R
Shark: fishing relevant reads in an RNA-Seq sample
2021 Denti, L; Pirola, Y; Previtali, M; Ceccato, T; Della Vedova, G; Rizzi, R; Bonizzoni, P
MALVIRUS: an integrated application for viral variant analysis
2021 Ciccolella, S; Denti, L; Bonizzoni, P; Della Vedova, G; Pirola, Y; Previtali, M
Computing the multi-string BWT and LCP array in external memory
2021 Bonizzoni, P; Della Vedova, G; Pirola, Y; Previtali, M; Rizzi, R
γ-TRIS: A graph-algorithm for comprehensive identification of vector genomic insertion sites
2020 Calabria, A; Beretta, S; Merelli, I; Spinozzi, G; Brasca, S; Pirola, Y; Benedicenti, F; Tenderini, E; Bonizzoni, P; Milanesi, L; Montini, E; Berger, B
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era
2019 Rizzi, R; Beretta, S; Patterson, M; Pirola, Y; Previtali, M; Della Vedova, G; Bonizzoni, P
Multithread multistring burrows-wheeler transform and longest common prefix array
2019 Bonizzoni, P; Della Vedova, G; Pirola, Y; Previtali, M; Rizzi, R
Bioconda: Sustainable and comprehensive software distribution for the life sciences
2018 Dale, R; Gruning, B; Sjodin, A; Rowe, J; Chapman, B; Tomkins-Tinch, C; Valieris, R; Batut, B; Caprez, A; Cokelaer, T; Yusuf, D; Beauchamp, K; Brinda, K; Wollmann, T; Corguille, G; Ryan, D; Bretaudeau, A; Hoogstrate, Y; Pedersen, B; Heeringen, S; Raden, M; Luna-Valero, S; Soranzo, N; Smet, M; Kuster, G; Kirchner, R; Pantano, L; Charlop-Powers, Z; Thornton, K; Martin, M; Beek, M; Maticzka, D; Miladi, M; Will, S; Gravouil, K; Unneberg, P; Brueffer, C; Blank, C; Piro, V; Wolff, J; Antao, T; Gladman, S; Shlyakhter, I; Hollander, M; Mabon, P; Shen, W; Boekel, J; Holtgrewe, M; Bouvier, D; de Ruiter, J; Cabral, J; Choudhary, S; Harding, N; Kleinkauf, R; Enns, E; Eggenhofer, F; Brown, J; Cock, P; Timm, H; Thomas, C; Zhang, X; Chambers, M; Turaga, N; Seiler, E; Brislawn, C; Pruesse, E; Fallmann, J; Kelleher, J; Nguyen, H; Parsons, L; Fang, Z; Stovner, E; Stoler, N; Ye, S; Wohlers, I; Farouni, R; Freeberg, M; Johnson, J; Bargull, M; Kensche, P; Webster, T; Eppley, J; Stahl, C; Rose, A; Reynolds, A; Wang, L; Garnier, X; Dirmeier, S; Knudsen, M; Taylor, J; Srivastava, A; Rai, V; Agren, R; Junge, A; Guimera, R; Khan, A; Schmeier, S; He, G; Pinello, L; Hagglund, E; Mikheyev, A; Preussner, J; Waters, N; Li, W; Capellades, J; Chande, A; Pirola, Y; Hiltemann, S; Bendall, M; Singh, S; Dunn, W; Drouin, A; Domenico, T; Bruijn, I; Larson, D; Chicco, D; Grassi, E; Gonnella, G; B, J; Wang, L; Giacomoni, F; Clarke, E; Blankenberg, D; Tran, C; Patro, R; Laurent, S; Gopez, M; Sennblad, B; Baaijens, J; Ewels, P; Wright, P; Enache, O; Roger, P; Dampier, W; Koppstein, D; Devisetty, U; Rausch, T; Cornwell, M; Salatino, A; Seiler, J; Jung, M; Kornobis, E; Cumbo, F; Stocker, B; Moskalenko, O; Bogema, D; Workentine, M; Newhouse, S; Leprevost, F; Arvai, K; Koster, J
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