Sfoglia per Autore
RecGraph: recombination-aware alignment of sequences to variation graphs
2024 Avila Cartes, J; Bonizzoni, P; Ciccolella, S; Della Vedova, G; Denti, L; Didelot, X; Monti, D; Pirola, Y
Solving the Minimal Positional Substring Cover Problem in Sublinear Space
2024 Bonizzoni, P; Boucher, C; Cozzi, D; Gagie, T; Pirola, Y
Unveiling the Connection Between the Lyndon Factorization and the Canonical Inverse Lyndon Factorization via a Border Property
2024 Bonizzoni, P; De Felice, C; Riccardi, B; Zaccagnino, R; Zizza, R
Accurate and fast clade assignment via deep learning and frequency chaos game representation
2023 Avila Cartes, J; Anand, S; Ciccolella, S; Bonizzoni, P; Della Vedova, G
Identification of Chimeric RNAs: a novel machine learning perspective
2023 Bonizzoni, P; De Felice, C; Pirola, Y; Rizzi, R; Zaccagnino, R; Zizza, R
Multiallelic Maximal Perfect Haplotype Blocks with Wildcards via PBWT
2023 Bonizzoni, P; Della Vedova, G; Pirola, Y; Rizzi, R; Sgrò, M
Data Structures for SMEM-Finding in the PBWT
2023 Bonizzoni, P; Boucher, C; Cozzi, D; Gagie, T; Köppl, D; Rossi, M
ESGq: Alternative Splicing events quantification across conditions based on Event Splicing Graphs
2023 Cozzi, D; Bonizzoni, P; Denti, L
μ-PBWT: a lightweight r-indexing of the PBWT for storing and querying UK Biobank data
2023 Cozzi, D; Rossi, M; Rubinacci, S; Gagie, T; Köppl, D; Boucher, C; Bonizzoni, P
SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads
2023 Denti, L; Khorsand, P; Bonizzoni, P; Hormozdiari, F; Chikhi, R
Computational graph pangenomics: a tutorial on data structures and their applications
2022 Baaijens, J; Bonizzoni, P; Boucher, C; Della Vedova, G; Pirola, Y; Rizzi, R; Sirén, J
Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches
2022 Bonizzoni, P; Costantini, M; De Felice, C; Petescia, A; Pirola, Y; Previtali, M; Rizzi, R; Stoye, J; Zaccagnino, R; Zizza, R
KFinger: Capturing Overlaps Between Long Reads by Using Lyndon Fingerprints
2022 Bonizzoni, P; Petescia, A; Pirola, Y; Rizzi, R; Zaccagnino, R; Zizza, R
Finding Maximal Exact Matches Using the r-Index
2022 Rossi, M; Oliva, M; Bonizzoni, P; Langmead, B; Gagie, T; Boucher, C
Can Formal Languages Help Pangenomics to Represent and Analyze Multiple Genomes?
2022 Bonizzoni, P; De Felice, C; Pirola, Y; Rizzi, R; Zaccagnino, R; Zizza, R
Shark: fishing relevant reads in an RNA-Seq sample
2021 Denti, L; Pirola, Y; Previtali, M; Ceccato, T; Della Vedova, G; Rizzi, R; Bonizzoni, P
Triplet-based similarity score for fully multi-labeled trees with poly-occurring labels
2021 Ciccolella, S; Bernardini, G; Denti, L; Bonizzoni, P; Previtali, M; Vedova, G
Effective Clustering for Single Cell Sequencing Cancer Data
2021 Ciccolella, S; Patterson, M; Bonizzoni, P; Della Vedova, G
Incomplete Directed Perfect Phylogeny in Linear Time
2021 Bernardini, G; Bonizzoni, P; Gawrychowski, P
Comparative genome analysis using sample-specific string detection in accurate long reads
2021 Khorsand, P; Denti, L; Bonizzoni, P; Chikhi, R; Hormozdiari, F
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