Sfoglia per Autore
Accurate and fast clade assignment via deep learning and frequency chaos game representation
2023 Avila Cartes, J; Anand, S; Ciccolella, S; Bonizzoni, P; Della Vedova, G
Computational graph pangenomics: a tutorial on data structures and their applications
2022 Baaijens, J; Bonizzoni, P; Boucher, C; Della Vedova, G; Pirola, Y; Rizzi, R; Sirén, J
Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches
2022 Bonizzoni, P; Costantini, M; De Felice, C; Petescia, A; Pirola, Y; Previtali, M; Rizzi, R; Stoye, J; Zaccagnino, R; Zizza, R
Finding Maximal Exact Matches Using the r-Index
2022 Rossi, M; Oliva, M; Bonizzoni, P; Langmead, B; Gagie, T; Boucher, C
SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads
2022 Denti, L; Khorsand, P; Bonizzoni, P; Hormozdiari, F; Chikhi, R
Can Formal Languages Help Pangenomics to Represent and Analyze Multiple Genomes?
2022 Bonizzoni, P; De Felice, C; Pirola, Y; Rizzi, R; Zaccagnino, R; Zizza, R
KFinger: Capturing Overlaps Between Long Reads by Using Lyndon Fingerprints
2022 Bonizzoni, P; Petescia, A; Pirola, Y; Rizzi, R; Zaccagnino, R; Zizza, R
Computing the multi-string BWT and LCP array in external memory
2021 Bonizzoni, P; Della Vedova, G; Pirola, Y; Previtali, M; Rizzi, R
Building bridges – Honoring Nataša Jonoska on the occasion of her 60th birthday
2021 Bonizzoni, P; Kari, L; Petre, I; Rozenberg, G
Incomplete Directed Perfect Phylogeny in Linear Time
2021 Bernardini, G; Bonizzoni, P; Gawrychowski, P
MALVIRUS: an integrated application for viral variant analysis
2021 Ciccolella, S; Denti, L; Bonizzoni, P; Della Vedova, G; Pirola, Y; Previtali, M
Effective Clustering for Single Cell Sequencing Cancer Data
2021 Ciccolella, S; Patterson, M; Bonizzoni, P; Della Vedova, G
Inferring Cancer Progression from Single-Cell Sequencing while Allowing Mutation Losses
2021 Ciccolella, S; Ricketts, C; Soto Gomez, M; Patterson, M; Silverbush, D; Bonizzoni, P; Hajirasouliha, I; Della Vedova, G
On the longest common prefix of suffixes in an inverse Lyndon factorization and other properties
2021 Bonizzoni, P; De Felice, C; Zaccagnino, R; Zizza, R
Triplet-based similarity score for fully multi-labeled trees with poly-occurring labels
2021 Ciccolella, S; Bernardini, G; Denti, L; Bonizzoni, P; Previtali, M; Vedova, G
Shark: fishing relevant reads in an RNA-Seq sample
2021 Denti, L; Pirola, Y; Previtali, M; Ceccato, T; Della Vedova, G; Rizzi, R; Bonizzoni, P
Comparative genome analysis using sample-specific string detection in accurate long reads
2021 Khorsand, P; Denti, L; Bonizzoni, P; Chikhi, R; Hormozdiari, F
Can We Replace Reads by Numeric Signatures? Lyndon Fingerprints as Representations of Sequencing Reads for Machine Learning
2021 Bonizzoni, P; De Felice, C; Petescia, A; Pirola, Y; Rizzi, R; Stoye, J; Zaccagnino, R; Zizza, R
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data
2020 Ciccolella, S; Soto Gomez, M; Patterson, M; Della Vedova, G; Hajirasouliha, I; Bonizzoni, P
γ-TRIS: A graph-algorithm for comprehensive identification of vector genomic insertion sites
2020 Calabria, A; Beretta, S; Merelli, I; Spinozzi, G; Brasca, S; Pirola, Y; Benedicenti, F; Tenderini, E; Bonizzoni, P; Milanesi, L; Montini, E; Berger, B
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