CHICCO, DAVIDE
CHICCO, DAVIDE
DIPARTIMENTO DI INFORMATICA, SISTEMISTICA E COMUNICAZIONE
Semantically improved genome-wide prediction of Gene Ontology annotations
2011 Masseroli, M; Tagliasacchi, M; Chicco, D
Probabilistic Latent Semantic Analysis for prediction of Gene Ontology annotations
2012 Masseroli, M; Chicco, D; Pinoli, P
Enhanced probabilistic latent semantic analysis with weighting schemes to predict genomic annotations
2013 Pinoli, P; Chicco, D; Masseroli, M
A discrete optimization approach for SVD best truncation choice based on ROC curves
2013 Chicco, D; Masseroli, M
Latent dirichlet allocation based on gibbs sampling for gene function prediction
2014 Pinoli, P; Chicco, D; Masseroli, M
Deep Autoencoder Neural Networks for Gene Ontology Annotation Predictions
2014 Chicco, D; Sadowski, P; Baldi, P
Computational algorithms to predict Gene Ontology annotations
2015 Pinoli, P; Chicco, D; Masseroli, M
Software Suite for Gene and Protein Annotation Prediction and Similarity Search
2015 Chicco, D; Masseroli, M
Extended spearman and Kendall coefficients for gene annotation list correlation
2015 Chicco, D; Ciceri, E; Masseroli, M
Ontology-Based Prediction and Prioritization of Gene Functional Annotations
2016 Chicco, D; Masseroli, M
Validation pipeline for computational prediction of genomics annotation
2016 Chicco, D; Masseroli, M
Genome Informatics 2016
2017 Chicco, D; Hoffman, M
Ten quick tips for machine learning in computational biology
2017 Chicco, D
Supervised deep learning embeddings for the prediction of cervical cancer diagnosis
2018 Fernandes, K; Chicco, D; Cardoso, J; Fernandes, J
Novelty indicator for enhanced prioritization of predicted gene ontology annotations
2018 Chicco, D; Palluzzi, F; Masseroli, M
Bioconda: Sustainable and comprehensive software distribution for the life sciences
2018 Dale, R; Gruning, B; Sjodin, A; Rowe, J; Chapman, B; Tomkins-Tinch, C; Valieris, R; Batut, B; Caprez, A; Cokelaer, T; Yusuf, D; Beauchamp, K; Brinda, K; Wollmann, T; Corguille, G; Ryan, D; Bretaudeau, A; Hoogstrate, Y; Pedersen, B; Heeringen, S; Raden, M; Luna-Valero, S; Soranzo, N; Smet, M; Kuster, G; Kirchner, R; Pantano, L; Charlop-Powers, Z; Thornton, K; Martin, M; Beek, M; Maticzka, D; Miladi, M; Will, S; Gravouil, K; Unneberg, P; Brueffer, C; Blank, C; Piro, V; Wolff, J; Antao, T; Gladman, S; Shlyakhter, I; Hollander, M; Mabon, P; Shen, W; Boekel, J; Holtgrewe, M; Bouvier, D; de Ruiter, J; Cabral, J; Choudhary, S; Harding, N; Kleinkauf, R; Enns, E; Eggenhofer, F; Brown, J; Cock, P; Timm, H; Thomas, C; Zhang, X; Chambers, M; Turaga, N; Seiler, E; Brislawn, C; Pruesse, E; Fallmann, J; Kelleher, J; Nguyen, H; Parsons, L; Fang, Z; Stovner, E; Stoler, N; Ye, S; Wohlers, I; Farouni, R; Freeberg, M; Johnson, J; Bargull, M; Kensche, P; Webster, T; Eppley, J; Stahl, C; Rose, A; Reynolds, A; Wang, L; Garnier, X; Dirmeier, S; Knudsen, M; Taylor, J; Srivastava, A; Rai, V; Agren, R; Junge, A; Guimera, R; Khan, A; Schmeier, S; He, G; Pinello, L; Hagglund, E; Mikheyev, A; Preussner, J; Waters, N; Li, W; Capellades, J; Chande, A; Pirola, Y; Hiltemann, S; Bendall, M; Singh, S; Dunn, W; Drouin, A; Domenico, T; Bruijn, I; Larson, D; Chicco, D; Grassi, E; Gonnella, G; B, J; Wang, L; Giacomoni, F; Clarke, E; Blankenberg, D; Tran, C; Patro, R; Laurent, S; Gopez, M; Sennblad, B; Baaijens, J; Ewels, P; Wright, P; Enache, O; Roger, P; Dampier, W; Koppstein, D; Devisetty, U; Rausch, T; Cornwell, M; Salatino, A; Seiler, J; Jung, M; Kornobis, E; Cumbo, F; Stocker, B; Moskalenko, O; Bogema, D; Workentine, M; Newhouse, S; Leprevost, F; Arvai, K; Koster, J
Computational prediction of diagnosis and feature selection on mesothelioma patient health records
2019 Chicco, D; Rovelli, C
Stratification of amyotrophic lateral sclerosis patients: A crowdsourcing approach
2019 Kueffner, R; Zach, N; Bronfeld, M; Norel, R; Atassi, N; Balagurusamy, V; Di Camillo, B; Chio, A; Cudkowicz, M; Dillenberger, D; Garcia-Garcia, J; Hardiman, O; Hoff, B; Knight, J; Leitner, M; Li, G; Mangravite, L; Norman, T; Wang, L; Xiao, J; Fang, W; Peng, J; Yang, C; Chang, H; Stolovitzky, G; Alkallas, R; Anghel, C; Avril, J; Bacardit, J; Balser, B; Balser, J; Bar-Sinai, Y; Ben-David, N; Ben-Zion, E; Bliss, R; Cai, J; Chernyshev, A; Chiang, J; Chicco, D; Corriveau, B; Dai, J; Deshpande, Y; Desplats, E; Durgin, J; Espiritu, S; Fan, F; Fevrier, P; Fridley, B; Godzik, A; Golinska, A; Gordon, J; Graw, S; Guo, Y; Herpelinck, T; Hopkins, J; Huang, B; Jacobsen, J; Jahandideh, S; Jeon, J; Ji, W; Jung, K; Karanevich, A; Koestler, D; Kozak, M; Kurz, C; Lalansingh, C; Larrieu, T; Lazzarini, N; Lerner, B; Lesinski, W; Liang, X; Lin, X; Lowe, J; Mackey, L; Meier, R; Min, W; Mnich, K; Nahmias, V; Noel-Macdonnell, J; O'Donnell, A; Paadre, S; Park, J; Polewko-Klim, A; Raghavan, R; Rudnicki, W; Saghapour, E; Salomond, J; Sankaran, K; Sendorek, D; Sharan, V; Shiah, Y; Sirois, J; Sumanaweera, D; Usset, J; Vang, Y; Vens, C; Wadden, D; Wang, D; Wong, W; Xie, X; Xu, Z; Yang, H; Yu, X; Zhang, H; Zhang, L; Zhang, S; Zhu, S
Biological and medical ontologies: Protein ontology (PRO)
2019 Chicco, D; Masseroli, M
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
2019 Menden, M; Wang, D; Mason, M; Szalai, B; Bulusu, K; Guan, Y; Yu, T; Kang, J; Jeon, M; Wolfinger, R; Nguyen, T; Zaslavskiy, M; Abante, J; Abecassis, B; Aben, N; Aghamirzaie, D; Aittokallio, T; Akhtari, F; Al-lazikani, B; Alam, T; Allam, A; Allen, C; de Almeida, M; Altarawy, D; Alves, V; Amadoz, A; Anchang, B; Antolin, A; Ash, J; Aznar, V; Ba-alawi, W; Bagheri, M; Bajic, V; Ball, G; Ballester, P; Baptista, D; Bare, C; Bateson, M; Bender, A; Bertrand, D; Wijayawardena, B; Boroevich, K; Bosdriesz, E; Bougouffa, S; Bounova, G; Brouwer, T; Bryant, B; Calaza, M; Calderone, A; Calza, S; Capuzzi, S; Carbonell-Caballero, J; Carlin, D; Carter, H; Castagnoli, L; Celebi, R; Cesareni, G; Chang, H; Chen, G; Chen, H; Chen, H; Cheng, L; Chernomoretz, A; Chicco, D; Cho, K; Cho, S; Choi, D; Choi, J; Choi, K; Choi, M; Cock, M; Coker, E; Cortes-Ciriano, I; Cserzo, M; Cubuk, C; Curtis, C; Daele, D; Dang, C; Dijkstra, T; Dopazo, J; Draghici, S; Drosou, A; Dumontier, M; Ehrhart, F; Eid, F; Elhefnawi, M; Elmarakeby, H; van Engelen, B; Engin, H; de Esch, I; Evelo, C; Falcao, A; Farag, S; Fernandez-Lozano, C; Fisch, K; Flobak, A; Fornari, C; Foroushani, A; Fotso, D; Fourches, D; Friend, S; Frigessi, A; Gao, F; Gao, X; Gerold, J; Gestraud, P; Ghosh, S; Gillberg, J; Godoy-Lorite, A; Godynyuk, L; Godzik, A; Goldenberg, A; Gomez-Cabrero, D; Gonen, M; de Graaf, C; Gray, H; Grechkin, M; Guimera, R; Guney, E; Haibe-Kains, B; Han, Y; Hase, T; He, D; He, L; Heath, L; Hellton, K; Helmer-Citterich, M; Hidalgo, M; Hidru, D; Hill, S; Hochreiter, S; Hong, S; Hovig, E; Hsueh, Y; Hu, Z; Huang, J; Huang, R; Hunyady, L; Hwang, J; Hwang, T; Hwang, W; Hwang, Y; Isayev, O; Don't Walk, O; Jack, J; Jahandideh, S; Ji, J; Jo, Y; Kamola, P; Kanev, G; Karacosta, L; Karimi, M; Kaski, S; Kazanov, M; Khamis, A; Khan, S; Kiani, N; Kim, A; Kim, J; Kim, J; Kim, K; Kim, K; Kim, S; Kim, Y; Kim, Y; Kirk, P; Kitano, H; Klambauer, G; Knowles, D; Ko, M; Kohn-Luque, A; Kooistra, A; Kuenemann, M; Kuiper, M; Kurz, C; Kwon, M; van Laarhoven, T; Laegreid, A; Lederer, S; Lee, H; Lee, J; Lee, Y; Lepp_aho, E; Lewis, R; Li, J; Li, L; Liley, J; Lim, W; Lin, C; Liu, Y; Lopez, Y; Low, J; Lysenko, A; Machado, D; Madhukar, N; Maeyer, D; Malpartida, A; Mamitsuka, H; Marabita, F; Marchal, K; Marttinen, P; Mason, D; Mazaheri, A; Mehmood, A; Mehreen, A; Michaut, M; Miller, R; Mitsopoulos, C; Modos, D; Moerbeke, M; Moo, K; Motsinger-Reif, A; Movva, R; Muraru, S; Muratov, E; Mushthofa, M; Nagarajan, N; Nakken, S; Nath, A; Neuvial, P; Newton, R; Ning, Z; Niz, C; Oliva, B; Olsen, C; Palmeri, A; Panesar, B; Papadopoulos, S; Park, J; Park, S; Park, S; Pawitan, Y; Peluso, D; Pendyala, S; Peng, J; Perfetto, L; Pirro, S; Plevritis, S; Politi, R; Poon, H; Porta, E; Prellner, I; Preuer, K; Pujana, M; Ramnarine, R; Reid, J; Reyal, F; Richardson, S; Ricketts, C; Rieswijk, L; Rocha, M; Rodriguez-Gonzalvez, C; Roell, K; Rotroff, D; de Ruiter, J; Rukawa, P; Sadacca, B; Safikhani, Z; Safitri, F; Sales-Pardo, M; Sauer, S; Schlichting, M; Seoane, J; Serra, J; Shang, M; Sharma, A; Sharma, H; Shen, Y; Shiga, M; Shin, M; Shkedy, Z; Shopsowitz, K; Sinai, S; Skola, D; Smirnov, P; Soerensen, I; Soerensen, P; Song, J; Song, S; Soufan, O; Spitzmueller, A; Steipe, B; Suphavilai, C; Tamayo, S; Tamborero, D; Tang, J; Tanoli, Z; Tarres-Deulofeu, M; Tegner, J; Thommesen, L; Tonekaboni, S; Tran, H; Troyer, E; Truong, A; Tsunoda, T; Turu, G; Tzeng, G; Verbeke, L; Videla, S; Vis, D; Voronkov, A; Votis, K; Wang, A; Wang, H; Wang, P; Wang, S; Wang, W; Wang, X; Wang, X; Wennerberg, K; Wernisch, L; Wessels, L; van Westen, G; Westerman, B; White, S; Willighagen, E; Wurdinger, T; Xie, L; Xie, S; Xu, H; Yadav, B; Yau, C; Yeerna, H; Yin, J; Yu, M; Yu, M; Yun, S; Zakharov, A; Zamichos, A; Zanin, M; Zeng, L; Zenil, H; Zhang, F; Zhang, P; Zhang, W; Zhao, H; Zhao, L; Zheng, W; Zoufir, A; Zucknick, M; Jang, I; Ghazoui, Z; Ahsen, M; Vogel, R; Neto, E; Norman, T; Tang, E; Garnett, M; Veroli, G; Fawell, S; Stolovitzky, G; Guinney, J; Dry, J; Saez-Rodriguez, J