Sfoglia per Autore
Constraining mechanism based simulations to identify ensembles of parametrizations to characterize metabolic features
2017 Colombo, R; Damiani, C; Mauri, G; Pescini, D
Constraint-based modeling and simulation of cell populations
2016 DI FILIPPO, M; Damiani, C; Colombo, R; Pescini, D; Mauri, G
Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models
2016 DI FILIPPO, M; Colombo, R; Damiani, C; Pescini, D; Gaglio, D; Vanoni, M; Alberghina, L; Mauri, G
Modeling and Analysis of Cellular Processes with Dynamical Probabilistic P Systems: Questions, Methods and Results
2015 Besozzi, D; Cazzaniga, P; Mauri, G; Pescini, D
Molecular Diffusion and Compartmentalization in Signal Transduction Pathways: An Application of Membrane Systems to the Study of Bacterial Chemotaxis
2014 Cazzaniga, P; Besozzi, D; Pescini, D; Mauri, G
cuTauLeaping: A GPU-Powered Tau-Leaping Stochastic Simulator for Massive Parallel Analyses of Biological Systems
2014 Nobile, M; Cazzaniga, P; Besozzi, D; Pescini, D; Mauri, G
Computational Strategies for a System-Level Understanding of Metabolism
2014 Cazzaniga, P; Damiani, C; Besozzi, D; Colombo, R; Nobile, M; Gaglio, D; Pescini, D; Molinari, S; Mauri, G; Alberghina, L; Vanoni, M
An ensemble evolutionary constraint-based approach to understand the emergence of metabolic phenotypes
2014 Damiani, C; Pescini, D; Colombo, R; Molinari, S; Alberghina, L; Vanoni, M; Mauri, G
An ensemble approach to the study of the emergence of metabolic and proliferative disorders via Flux Balance Analysis
2013 Damiani, C; Colombo, R; Molinari, S; Pescini, D; Gaglio, D; Vanoni, M; Alberghina, L; Mauri, G
cupSODA: A CUDA-Powered Simulator of Mass-Action Kinetics
2013 Nobile, M; Besozzi, D; Cazzaniga, P; Mauri, G; Pescini, D
GPU-powered Simulation Methodologies for Biological Systems
2013 Besozzi, D; Caravagna, G; Cazzaniga, P; Nobile, M; Pescini, D; Re, A
Reverse Engineering of Kinetic Reaction Networks by means of Cartesian Genetic Programming and Particle Swarm Optimization
2013 Nobile, M; Besozzi, D; Cazzaniga, P; Mauri, G; Pescini, D
In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae
2013 Amara, F; Colombo, R; Cazzaniga, P; Pescini, D; Csikász Nagy, A; Falconi, M; Besozzi, D; Plevani, P
A GPU-based Multi-Swarm PSO Method for Parameter Estimation in Stochastic Biological Systems Exploiting Discrete-Time Target Series
2012 Nobile, M; Besozzi, D; Cazzaniga, P; Mauri, G; Pescini, D
Estimating reaction constants in stochastic biological systems with a multi-swarm PSO running on GPUs
2012 Nobile, M; Besozzi, D; Cazzaniga, P; Mauri, G; Pescini, D
The role of feedback control mechanisms on the establishment of oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae
2012 Besozzi, D; Cazzaniga, P; Pescini, D; Mauri, G; Colombo, S; Martegani, E
Simulation of the Ras/cAMP/PKA pathway in budding yeast highlights the establishment of stable oscillatory states
2012 Pescini, D; Cazzaniga, P; Besozzi, D; Mauri, G; Amigoni, L; Colombo, S; Martegani, E
Investigating oscillatory regimens in the Ras/cAMP/PKA pathway in S. cerevisiae: the role of feedback control mechanisms
2011 Pescini, D; Cazzaniga, P; Besozzi, D; Mauri, G; Colombo, S; Martegani, E
Modeling diffusion in a signal transduction Pathway: the use of virtual volumes in P systems
2011 Besozzi, D; Cazzaniga, P; Cocolo, S; Mauri, G; Pescini, D
Grid Computing for Sensitivity Analysis of Stochastic Biological Models
2011 Merelli, I; Pescini, D; Mosca, E; Cazzaniga, P; Maj, C; Mauri, G; Milanesi, L
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